miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 3' -61.6 NC_006560.1 + 53473 0.66 0.663768
Target:  5'- -cCGCCCgagGCCG-CgGCGGCGCgCGAGg -3'
miRNA:   3'- uaGUGGGg--CGGCaG-CGUCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 10703 0.71 0.34587
Target:  5'- -aCACCaCGUCGUCGcCGGCGCUCGc- -3'
miRNA:   3'- uaGUGGgGCGGCAGC-GUCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 65280 0.71 0.34587
Target:  5'- cGUCACCCCGCUggcccgGUCGCAGUacagaaaccGC-CGGGg -3'
miRNA:   3'- -UAGUGGGGCGG------CAGCGUCG---------CGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 88377 0.71 0.34587
Target:  5'- -gCAcCCCCGCCGUgcUGCGcGUGCUCGAc -3'
miRNA:   3'- uaGU-GGGGCGGCA--GCGU-CGCGAGCUc -5'
31186 3' -61.6 NC_006560.1 + 54428 0.71 0.34587
Target:  5'- --aGCCCCaGCgCGUCGCgGGCGC-CGAGg -3'
miRNA:   3'- uagUGGGG-CG-GCAGCG-UCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 110594 0.71 0.353409
Target:  5'- -cCACCgCGuCUGUCGCGGCcGCUCGGc -3'
miRNA:   3'- uaGUGGgGC-GGCAGCGUCG-CGAGCUc -5'
31186 3' -61.6 NC_006560.1 + 140353 0.71 0.361063
Target:  5'- --aGCCCCGCgGgcgucggCGCGGCGCggccCGAGg -3'
miRNA:   3'- uagUGGGGCGgCa------GCGUCGCGa---GCUC- -5'
31186 3' -61.6 NC_006560.1 + 53771 0.71 0.376716
Target:  5'- -gCGgCCCGUCgGUCGCGGCGCccccCGAGg -3'
miRNA:   3'- uaGUgGGGCGG-CAGCGUCGCGa---GCUC- -5'
31186 3' -61.6 NC_006560.1 + 78054 0.71 0.384712
Target:  5'- --gGCCCCggagcuggcgGCCGgcggcgcggcCGCGGCGCUCGGGg -3'
miRNA:   3'- uagUGGGG----------CGGCa---------GCGUCGCGAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 115905 0.72 0.323949
Target:  5'- --gGCCCCGCgGUCGU-GCGgUCGGGg -3'
miRNA:   3'- uagUGGGGCGgCAGCGuCGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 15223 0.72 0.305803
Target:  5'- -cCGCCCCGCCGgucccauccgcggcCGguGCGgUCGGGg -3'
miRNA:   3'- uaGUGGGGCGGCa-------------GCguCGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 1021 0.73 0.287793
Target:  5'- -cCGCCCCGCCGUcucCGCccucccggguaccuGGCGCUCGu- -3'
miRNA:   3'- uaGUGGGGCGGCA---GCG--------------UCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 131418 0.77 0.144968
Target:  5'- -gCGCCCCugggcccggGCCGUCGCGGCGCUggcccuggcCGAGg -3'
miRNA:   3'- uaGUGGGG---------CGGCAGCGUCGCGA---------GCUC- -5'
31186 3' -61.6 NC_006560.1 + 42463 0.77 0.160073
Target:  5'- cAUCugCCCggccGCCGUCGgGGCGgUCGAGg -3'
miRNA:   3'- -UAGugGGG----CGGCAGCgUCGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 124128 0.76 0.168146
Target:  5'- -gCACCCaCGgCGUCGCGGCGCcggCGGGg -3'
miRNA:   3'- uaGUGGG-GCgGCAGCGUCGCGa--GCUC- -5'
31186 3' -61.6 NC_006560.1 + 94174 0.76 0.189943
Target:  5'- -aCGCCCCcgcgcggcGCCGUCGCcGCGCUgGAGc -3'
miRNA:   3'- uaGUGGGG--------CGGCAGCGuCGCGAgCUC- -5'
31186 3' -61.6 NC_006560.1 + 112560 0.75 0.209132
Target:  5'- gGUCGCCgCCGuCCG-CGgGGCGUUCGAGg -3'
miRNA:   3'- -UAGUGG-GGC-GGCaGCgUCGCGAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 130341 0.74 0.235446
Target:  5'- cGUC-CCCCGCCGcCGCGcCGCUgGAGa -3'
miRNA:   3'- -UAGuGGGGCGGCaGCGUcGCGAgCUC- -5'
31186 3' -61.6 NC_006560.1 + 70070 0.73 0.276888
Target:  5'- -gCACgCCGUCGUgCGCGGCGCcaUCGAGc -3'
miRNA:   3'- uaGUGgGGCGGCA-GCGUCGCG--AGCUC- -5'
31186 3' -61.6 NC_006560.1 + 110158 0.73 0.283262
Target:  5'- -aCGCCCCGCugugCGUCGCgAGCGCcguggCGGGg -3'
miRNA:   3'- uaGUGGGGCG----GCAGCG-UCGCGa----GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.