miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 3' -61.6 NC_006560.1 + 100 0.67 0.565039
Target:  5'- -gCGCCCCGCCccCGCGGcCGCggccggcgCGGGu -3'
miRNA:   3'- uaGUGGGGCGGcaGCGUC-GCGa-------GCUC- -5'
31186 3' -61.6 NC_006560.1 + 184 0.66 0.640016
Target:  5'- --gGCCCCGCCGgcguuuuuuuccgCGCGcGCGCcgccgCGGGa -3'
miRNA:   3'- uagUGGGGCGGCa------------GCGU-CGCGa----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 665 0.66 0.634069
Target:  5'- -gCACCCCGgCGcgccCGCGGCGCgggcucgucgCGGGc -3'
miRNA:   3'- uaGUGGGGCgGCa---GCGUCGCGa---------GCUC- -5'
31186 3' -61.6 NC_006560.1 + 1021 0.73 0.287793
Target:  5'- -cCGCCCCGCCGUcucCGCccucccggguaccuGGCGCUCGu- -3'
miRNA:   3'- uaGUGGGGCGGCA---GCG--------------UCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 2789 0.67 0.574818
Target:  5'- -aCGCCCUGCgCGcC-CAGCGC-CGAGa -3'
miRNA:   3'- uaGUGGGGCG-GCaGcGUCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 4516 0.68 0.507481
Target:  5'- uGUCGCCcaggCCGCCGUagaGCAcGCGCccCGGGg -3'
miRNA:   3'- -UAGUGG----GGCGGCAg--CGU-CGCGa-GCUC- -5'
31186 3' -61.6 NC_006560.1 + 10403 0.7 0.417797
Target:  5'- -aCAUCCCGCUGUCGCu-CGgUCGGGc -3'
miRNA:   3'- uaGUGGGGCGGCAGCGucGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 10703 0.71 0.34587
Target:  5'- -aCACCaCGUCGUCGcCGGCGCUCGc- -3'
miRNA:   3'- uaGUGGgGCGGCAGC-GUCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 11533 0.66 0.663768
Target:  5'- -aC-CCCCGCCGggggUCGCGGgG-UCGGGg -3'
miRNA:   3'- uaGuGGGGCGGC----AGCGUCgCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 12823 0.69 0.470519
Target:  5'- cUCGuCCUCGUCGUCGgGGaccaGCUCGGGc -3'
miRNA:   3'- uAGU-GGGGCGGCAGCgUCg---CGAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 14284 0.68 0.555305
Target:  5'- --gGCgUCGCCGgcgagCGCGGCGC-CGGGg -3'
miRNA:   3'- uagUGgGGCGGCa----GCGUCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 15223 0.72 0.305803
Target:  5'- -cCGCCCCGCCGgucccauccgcggcCGguGCGgUCGGGg -3'
miRNA:   3'- uaGUGGGGCGGCa-------------GCguCGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 16087 0.7 0.417797
Target:  5'- --gGCCCCGCCGUCGgucccgcugaacCGGCGgaUGGGg -3'
miRNA:   3'- uagUGGGGCGGCAGC------------GUCGCgaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 17445 0.69 0.470519
Target:  5'- -cCGCCUCGCgGUCGaGGCGCUCcAGc -3'
miRNA:   3'- uaGUGGGGCGgCAGCgUCGCGAGcUC- -5'
31186 3' -61.6 NC_006560.1 + 18086 0.68 0.555305
Target:  5'- -cCGCCCCucgagagagcggGCgGUCGCGGCGUUCu-- -3'
miRNA:   3'- uaGUGGGG------------CGgCAGCGUCGCGAGcuc -5'
31186 3' -61.6 NC_006560.1 + 22063 0.68 0.545621
Target:  5'- --gGCCgCCGCCGUCGCA-CGCggCGGc -3'
miRNA:   3'- uagUGG-GGCGGCAGCGUcGCGa-GCUc -5'
31186 3' -61.6 NC_006560.1 + 22182 0.66 0.653882
Target:  5'- cUguCCCCGCCGUCGgGGcCGC-CGu- -3'
miRNA:   3'- uAguGGGGCGGCAGCgUC-GCGaGCuc -5'
31186 3' -61.6 NC_006560.1 + 22620 0.67 0.565039
Target:  5'- -gCGCCgCCGCCGcCGCGGgccgcCGC-CGAGa -3'
miRNA:   3'- uaGUGG-GGCGGCaGCGUC-----GCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 23524 0.7 0.409364
Target:  5'- gGUCugCCgCGCCGUCauggaGGCGCUCGu- -3'
miRNA:   3'- -UAGugGG-GCGGCAGcg---UCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 23612 0.66 0.653882
Target:  5'- ---gUCCCGCCG-CGCGGCGC-CGc- -3'
miRNA:   3'- uaguGGGGCGGCaGCGUCGCGaGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.