miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3119 5' -62.7 NC_001493.1 + 32596 0.66 0.610306
Target:  5'- cGCGACCgGGaCgggCGUUUACGGUCcGGg -3'
miRNA:   3'- aCGCUGGgUC-Ga--GCGGGUGCCGGaCC- -5'
3119 5' -62.7 NC_001493.1 + 44488 0.66 0.610306
Target:  5'- --aGACCguGCUCGCggacgagcgguuCCGgGGCCUGc -3'
miRNA:   3'- acgCUGGguCGAGCG------------GGUgCCGGACc -5'
3119 5' -62.7 NC_001493.1 + 107222 0.66 0.600478
Target:  5'- gGCGcCCCGGCggUCGaCCUgaggGCGGCCccGGu -3'
miRNA:   3'- aCGCuGGGUCG--AGC-GGG----UGCCGGa-CC- -5'
3119 5' -62.7 NC_001493.1 + 18650 0.66 0.589693
Target:  5'- aGCGACCCGagucucaccccccGCUCGCaCCACa-CCcGGa -3'
miRNA:   3'- aCGCUGGGU-------------CGAGCG-GGUGccGGaCC- -5'
3119 5' -62.7 NC_001493.1 + 28591 0.66 0.580893
Target:  5'- aGCGGCCguGCgcaucUCGgUCGCGuGCCUGu -3'
miRNA:   3'- aCGCUGGguCG-----AGCgGGUGC-CGGACc -5'
3119 5' -62.7 NC_001493.1 + 102078 0.66 0.571149
Target:  5'- cGCGACCCuGGC-CGCCUcacaACGGggaUUGGu -3'
miRNA:   3'- aCGCUGGG-UCGaGCGGG----UGCCg--GACC- -5'
3119 5' -62.7 NC_001493.1 + 3090 0.66 0.571149
Target:  5'- cGcCGACCUGGCUgGUa-ACGGCCUcGGu -3'
miRNA:   3'- aC-GCUGGGUCGAgCGggUGCCGGA-CC- -5'
3119 5' -62.7 NC_001493.1 + 118644 0.66 0.571149
Target:  5'- cGcCGACCUGGCUgGUa-ACGGCCUcGGu -3'
miRNA:   3'- aC-GCUGGGUCGAgCGggUGCCGGA-CC- -5'
3119 5' -62.7 NC_001493.1 + 47886 0.66 0.568233
Target:  5'- cGCgugGACCCAGUgcaugagcucgcggUCGgaCCCGCGGgUCUGGa -3'
miRNA:   3'- aCG---CUGGGUCG--------------AGC--GGGUGCC-GGACC- -5'
3119 5' -62.7 NC_001493.1 + 108779 0.66 0.558542
Target:  5'- aGCGGCgCGGCUCcgaUCACgggaggaggugccgGGCCUGGa -3'
miRNA:   3'- aCGCUGgGUCGAGcg-GGUG--------------CCGGACC- -5'
3119 5' -62.7 NC_001493.1 + 128959 0.66 0.551786
Target:  5'- gUGCGGCCgcgCGGUcgugggGCCCACGGUgaGGg -3'
miRNA:   3'- -ACGCUGG---GUCGag----CGGGUGCCGgaCC- -5'
3119 5' -62.7 NC_001493.1 + 13405 0.66 0.551786
Target:  5'- gUGCGGCCgcgCGGUcgugggGCCCACGGUgaGGg -3'
miRNA:   3'- -ACGCUGG---GUCGag----CGGGUGCCGgaCC- -5'
3119 5' -62.7 NC_001493.1 + 112667 0.67 0.532626
Target:  5'- cGCG-UCgAGCcugCGCCCGagauccccgaUGGCCUGGa -3'
miRNA:   3'- aCGCuGGgUCGa--GCGGGU----------GCCGGACC- -5'
3119 5' -62.7 NC_001493.1 + 9955 0.67 0.52219
Target:  5'- cGCG-CCgAGCUCGacgucCCCGCGGUucgagcgCUGGu -3'
miRNA:   3'- aCGCuGGgUCGAGC-----GGGUGCCG-------GACC- -5'
3119 5' -62.7 NC_001493.1 + 125509 0.67 0.52219
Target:  5'- cGCG-CCgAGCUCGacgucCCCGCGGUucgagcgCUGGu -3'
miRNA:   3'- aCGCuGGgUCGAGC-----GGGUGCCG-------GACC- -5'
3119 5' -62.7 NC_001493.1 + 44019 0.68 0.485873
Target:  5'- cUGCGGCUgauCGGCUCcCCCAgGGCCcGa -3'
miRNA:   3'- -ACGCUGG---GUCGAGcGGGUgCCGGaCc -5'
3119 5' -62.7 NC_001493.1 + 119750 0.68 0.476753
Target:  5'- aUGCGAUCCAGCgagUuUCgAUGGCCUGa -3'
miRNA:   3'- -ACGCUGGGUCGa--GcGGgUGCCGGACc -5'
3119 5' -62.7 NC_001493.1 + 47361 0.68 0.476753
Target:  5'- cGUGACCCAGg-CGUUgACGGCCa-- -3'
miRNA:   3'- aCGCUGGGUCgaGCGGgUGCCGGacc -5'
3119 5' -62.7 NC_001493.1 + 42101 0.68 0.46682
Target:  5'- gUGCGgcgccguggacucGCCCGGCUCGgucgugaCCAUGGCCa-- -3'
miRNA:   3'- -ACGC-------------UGGGUCGAGCg------GGUGCCGGacc -5'
3119 5' -62.7 NC_001493.1 + 20935 0.68 0.44992
Target:  5'- cGCGACU---CUCGCCgagaGCGGCCUGa -3'
miRNA:   3'- aCGCUGGgucGAGCGGg---UGCCGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.