miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31195 5' -56.1 NC_006560.1 + 91653 0.66 0.871743
Target:  5'- gCCAGC-CAGUCGGUGgaGGGCCGc---- -3'
miRNA:   3'- -GGUCGuGUCGGUCGC--UCCGGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 26848 0.66 0.876856
Target:  5'- -gGGCGCGGCCggccgccgccccccGGCGcccguGGCgGGAGAGc -3'
miRNA:   3'- ggUCGUGUCGG--------------UCGCu----CCGgUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 44291 0.66 0.879014
Target:  5'- aCGGCACAcGCCucaccgcGCGAuGGCCGGu--- -3'
miRNA:   3'- gGUCGUGU-CGGu------CGCU-CCGGUCuuuc -5'
31195 5' -56.1 NC_006560.1 + 140263 0.66 0.870262
Target:  5'- gCCAGUccaacgagggcggGCGGCCGGCGGGGguaucguCCAGu--- -3'
miRNA:   3'- -GGUCG-------------UGUCGGUCGCUCC-------GGUCuuuc -5'
31195 5' -56.1 NC_006560.1 + 81577 0.66 0.871743
Target:  5'- gCCGcGUGCGGCCGGCGuccucGGGCCccauGAAc- -3'
miRNA:   3'- -GGU-CGUGUCGGUCGC-----UCCGGu---CUUuc -5'
31195 5' -56.1 NC_006560.1 + 25180 0.66 0.871743
Target:  5'- aCC-GCGCGGCCGcGCGcgccGGGCCcGAGGc -3'
miRNA:   3'- -GGuCGUGUCGGU-CGC----UCCGGuCUUUc -5'
31195 5' -56.1 NC_006560.1 + 36099 0.66 0.899472
Target:  5'- cCCGGCGgGGCCgcGGCGGGcaCCGGGGc- -3'
miRNA:   3'- -GGUCGUgUCGG--UCGCUCc-GGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 142065 0.66 0.871743
Target:  5'- uCCGcGCACcccgaggccgGGCgGGCGGGGCCGcggcgcGGAGGa -3'
miRNA:   3'- -GGU-CGUG----------UCGgUCGCUCCGGU------CUUUC- -5'
31195 5' -56.1 NC_006560.1 + 88948 0.66 0.871743
Target:  5'- -aGGCcCGGCCc-CGAGGgCGGAGAGg -3'
miRNA:   3'- ggUCGuGUCGGucGCUCCgGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 16670 0.66 0.871743
Target:  5'- gCGGUACuGCgAGaCGAGGCgGGAGc- -3'
miRNA:   3'- gGUCGUGuCGgUC-GCUCCGgUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 47162 0.66 0.871743
Target:  5'- -aGGCGCcgAGCUcGCGAGGCgCgAGggGGg -3'
miRNA:   3'- ggUCGUG--UCGGuCGCUCCG-G-UCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 120500 0.66 0.871743
Target:  5'- aCCuGCACgagguggucgcgGGgCAGCGGGGCgCcGAGAGg -3'
miRNA:   3'- -GGuCGUG------------UCgGUCGCUCCG-GuCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 32429 0.66 0.871743
Target:  5'- cCCAG-GgGGCCGG-GGGGCCGGGGc- -3'
miRNA:   3'- -GGUCgUgUCGGUCgCUCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 64919 0.66 0.871004
Target:  5'- gCGGCACGGggaacguCgAGCGGGGaCGGggGGg -3'
miRNA:   3'- gGUCGUGUC-------GgUCGCUCCgGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 147586 0.66 0.871743
Target:  5'- aCGGUGCGGCCcccgagGGUgacgGAGGCCGGGGc- -3'
miRNA:   3'- gGUCGUGUCGG------UCG----CUCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 81369 0.66 0.871743
Target:  5'- aCCAGCagcgcgggcggaACGGCCcgcugcuGCcGGGCCAGcGAGg -3'
miRNA:   3'- -GGUCG------------UGUCGGu------CGcUCCGGUCuUUC- -5'
31195 5' -56.1 NC_006560.1 + 17879 0.66 0.871743
Target:  5'- --cGCGcCAGCCAGCGGGcGCCccggcGGAGc- -3'
miRNA:   3'- gguCGU-GUCGGUCGCUC-CGG-----UCUUuc -5'
31195 5' -56.1 NC_006560.1 + 2606 0.66 0.871743
Target:  5'- gCGGCggGCAGCaCGGCGcAGGgCAGguAGa -3'
miRNA:   3'- gGUCG--UGUCG-GUCGC-UCCgGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 5649 0.66 0.871743
Target:  5'- gCGGCGCccGGCCGGCuccgccccGGGGCgCGGggGc -3'
miRNA:   3'- gGUCGUG--UCGGUCG--------CUCCG-GUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 33020 0.66 0.871743
Target:  5'- -gGGCGggaaGGCCGGCGAGG--GGAAGGg -3'
miRNA:   3'- ggUCGUg---UCGGUCGCUCCggUCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.