miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31195 5' -56.1 NC_006560.1 + 3999 0.87 0.080723
Target:  5'- gCGGCGCcguAGCCGGCGAGGCCGGggGc -3'
miRNA:   3'- gGUCGUG---UCGGUCGCUCCGGUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 3099 0.85 0.097339
Target:  5'- gCAGCgcGCGGCCAGCGAGGCCAGc--- -3'
miRNA:   3'- gGUCG--UGUCGGUCGCUCCGGUCuuuc -5'
31195 5' -56.1 NC_006560.1 + 15345 0.84 0.123471
Target:  5'- gCCGGCGCGGCCggggucgcGGUGAGGCCGGGAc- -3'
miRNA:   3'- -GGUCGUGUCGG--------UCGCUCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 32140 0.81 0.177244
Target:  5'- gCCGGuCACGGCCgGGCGGGGCCGGGc-- -3'
miRNA:   3'- -GGUC-GUGUCGG-UCGCUCCGGUCUuuc -5'
31195 5' -56.1 NC_006560.1 + 27178 0.8 0.224224
Target:  5'- gCGGCGCGcgcgcggaaaaaaacGCCGGCGGGGCCGGGAc- -3'
miRNA:   3'- gGUCGUGU---------------CGGUCGCUCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 101363 0.79 0.233204
Target:  5'- -aGGCACAgGgCGGCGAGGCCGGGAAa -3'
miRNA:   3'- ggUCGUGU-CgGUCGCUCCGGUCUUUc -5'
31195 5' -56.1 NC_006560.1 + 32956 0.79 0.233204
Target:  5'- gCGGCGacgggaaGGCCGGCGAGGgCAGggGGg -3'
miRNA:   3'- gGUCGUg------UCGGUCGCUCCgGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 95948 0.77 0.325038
Target:  5'- cCCaAGCucGCGGCCGGCG-GGCCGGAGu- -3'
miRNA:   3'- -GG-UCG--UGUCGGUCGCuCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 32990 0.77 0.332537
Target:  5'- -gGGCGggaaGGCCGGCGAGGgCAGggGGg -3'
miRNA:   3'- ggUCGUg---UCGGUCGCUCCgGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 95027 0.76 0.355788
Target:  5'- -aGGCGgGGCCGGCGccgcGGCCGGGGAGc -3'
miRNA:   3'- ggUCGUgUCGGUCGCu---CCGGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 57714 0.76 0.362982
Target:  5'- uCCgAGCAC-GCCGGCGAGGagcagccCCGGGAGGg -3'
miRNA:   3'- -GG-UCGUGuCGGUCGCUCC-------GGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 74906 0.76 0.363788
Target:  5'- gCGGCGCGGCCGucGCGAcGGCCAGccccGAGa -3'
miRNA:   3'- gGUCGUGUCGGU--CGCU-CCGGUCu---UUC- -5'
31195 5' -56.1 NC_006560.1 + 146876 0.76 0.371912
Target:  5'- cCCAGCGCcugGGCCAGgGccuGGGCCAGGGc- -3'
miRNA:   3'- -GGUCGUG---UCGGUCgC---UCCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 27269 0.76 0.371912
Target:  5'- gCCGGcCGCGGCCGcgggggcggggcGCGGGGCgCGGGGAGg -3'
miRNA:   3'- -GGUC-GUGUCGGU------------CGCUCCG-GUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 32335 0.76 0.380159
Target:  5'- -aGGCcCGGCCAG-GGGGCCGGggGGc -3'
miRNA:   3'- ggUCGuGUCGGUCgCUCCGGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 40920 0.75 0.388527
Target:  5'- gCGGCACAGCgCGGCGGGGUCccgcgggucuucGGggGGc -3'
miRNA:   3'- gGUCGUGUCG-GUCGCUCCGG------------UCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 81337 0.75 0.397016
Target:  5'- aCAGCGCGGCCcccaGGaCGAGGCCGGc--- -3'
miRNA:   3'- gGUCGUGUCGG----UC-GCUCCGGUCuuuc -5'
31195 5' -56.1 NC_006560.1 + 2876 0.75 0.405622
Target:  5'- gCCAGCGCGGCgAGC-AGGaaGGAGAGg -3'
miRNA:   3'- -GGUCGUGUCGgUCGcUCCggUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 15230 0.75 0.431232
Target:  5'- gCCGGUcccauccGCGGCCGGUGcGGUCGGGGAGg -3'
miRNA:   3'- -GGUCG-------UGUCGGUCGCuCCGGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 14278 0.75 0.432132
Target:  5'- gCCGGCgGCGucGCCGGCGAGcgcggcGCCGGGGAGg -3'
miRNA:   3'- -GGUCG-UGU--CGGUCGCUC------CGGUCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.