Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31195 | 5' | -56.1 | NC_006560.1 | + | 36099 | 0.66 | 0.899472 |
Target: 5'- cCCGGCGgGGCCgcGGCGGGcaCCGGGGc- -3' miRNA: 3'- -GGUCGUgUCGG--UCGCUCc-GGUCUUuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 146876 | 0.76 | 0.371912 |
Target: 5'- cCCAGCGCcugGGCCAGgGccuGGGCCAGGGc- -3' miRNA: 3'- -GGUCGUG---UCGGUCgC---UCCGGUCUUuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 27269 | 0.76 | 0.371912 |
Target: 5'- gCCGGcCGCGGCCGcgggggcggggcGCGGGGCgCGGGGAGg -3' miRNA: 3'- -GGUC-GUGUCGGU------------CGCUCCG-GUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 32335 | 0.76 | 0.380159 |
Target: 5'- -aGGCcCGGCCAG-GGGGCCGGggGGc -3' miRNA: 3'- ggUCGuGUCGGUCgCUCCGGUCuuUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 40920 | 0.75 | 0.388527 |
Target: 5'- gCGGCACAGCgCGGCGGGGUCccgcgggucuucGGggGGc -3' miRNA: 3'- gGUCGUGUCG-GUCGCUCCGG------------UCuuUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 81337 | 0.75 | 0.397016 |
Target: 5'- aCAGCGCGGCCcccaGGaCGAGGCCGGc--- -3' miRNA: 3'- gGUCGUGUCGG----UC-GCUCCGGUCuuuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 2876 | 0.75 | 0.405622 |
Target: 5'- gCCAGCGCGGCgAGC-AGGaaGGAGAGg -3' miRNA: 3'- -GGUCGUGUCGgUCGcUCCggUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 15230 | 0.75 | 0.431232 |
Target: 5'- gCCGGUcccauccGCGGCCGGUGcGGUCGGGGAGg -3' miRNA: 3'- -GGUCG-------UGUCGGUCGCuCCGGUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 14278 | 0.75 | 0.432132 |
Target: 5'- gCCGGCgGCGucGCCGGCGAGcgcggcGCCGGGGAGg -3' miRNA: 3'- -GGUCG-UGU--CGGUCGCUC------CGGUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 74906 | 0.76 | 0.363788 |
Target: 5'- gCGGCGCGGCCGucGCGAcGGCCAGccccGAGa -3' miRNA: 3'- gGUCGUGUCGGU--CGCU-CCGGUCu---UUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 57714 | 0.76 | 0.362982 |
Target: 5'- uCCgAGCAC-GCCGGCGAGGagcagccCCGGGAGGg -3' miRNA: 3'- -GG-UCGUGuCGGUCGCUCC-------GGUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 95027 | 0.76 | 0.355788 |
Target: 5'- -aGGCGgGGCCGGCGccgcGGCCGGGGAGc -3' miRNA: 3'- ggUCGUgUCGGUCGCu---CCGGUCUUUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 3099 | 0.85 | 0.097339 |
Target: 5'- gCAGCgcGCGGCCAGCGAGGCCAGc--- -3' miRNA: 3'- gGUCG--UGUCGGUCGCUCCGGUCuuuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 15345 | 0.84 | 0.123471 |
Target: 5'- gCCGGCGCGGCCggggucgcGGUGAGGCCGGGAc- -3' miRNA: 3'- -GGUCGUGUCGG--------UCGCUCCGGUCUUuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 32140 | 0.81 | 0.177244 |
Target: 5'- gCCGGuCACGGCCgGGCGGGGCCGGGc-- -3' miRNA: 3'- -GGUC-GUGUCGG-UCGCUCCGGUCUuuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 27178 | 0.8 | 0.224224 |
Target: 5'- gCGGCGCGcgcgcggaaaaaaacGCCGGCGGGGCCGGGAc- -3' miRNA: 3'- gGUCGUGU---------------CGGUCGCUCCGGUCUUuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 32956 | 0.79 | 0.233204 |
Target: 5'- gCGGCGacgggaaGGCCGGCGAGGgCAGggGGg -3' miRNA: 3'- gGUCGUg------UCGGUCGCUCCgGUCuuUC- -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 101363 | 0.79 | 0.233204 |
Target: 5'- -aGGCACAgGgCGGCGAGGCCGGGAAa -3' miRNA: 3'- ggUCGUGU-CgGUCGCUCCGGUCUUUc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 95948 | 0.77 | 0.325038 |
Target: 5'- cCCaAGCucGCGGCCGGCG-GGCCGGAGu- -3' miRNA: 3'- -GG-UCG--UGUCGGUCGCuCCGGUCUUuc -5' |
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31195 | 5' | -56.1 | NC_006560.1 | + | 32990 | 0.77 | 0.332537 |
Target: 5'- -gGGCGggaaGGCCGGCGAGGgCAGggGGg -3' miRNA: 3'- ggUCGUg---UCGGUCGCUCCgGUCuuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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