miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3121 5' -62.5 NC_001493.1 + 115537 1.09 0.000659
Target:  5'- cCAGACCCACCCUCGCCACCCCCACGCc -3'
miRNA:   3'- -GUCUGGGUGGGAGCGGUGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 110283 0.75 0.178337
Target:  5'- gGGGCUCaAUCUUCGCCAUCgCCGCGCg -3'
miRNA:   3'- gUCUGGG-UGGGAGCGGUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 109018 0.75 0.182701
Target:  5'- uCAGACCCACCgcgagagagcugCUCGuCUACCCCaggUACGCa -3'
miRNA:   3'- -GUCUGGGUGG------------GAGC-GGUGGGG---GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 57505 0.74 0.200632
Target:  5'- cCAG-CCCGCCCUCGCCGagcaucuCCUCCAUcaugGCa -3'
miRNA:   3'- -GUCuGGGUGGGAGCGGU-------GGGGGUG----CG- -5'
3121 5' -62.5 NC_001493.1 + 102294 0.74 0.201111
Target:  5'- aGGACCgGCCgUCGCgACCCCCcgaccCGCc -3'
miRNA:   3'- gUCUGGgUGGgAGCGgUGGGGGu----GCG- -5'
3121 5' -62.5 NC_001493.1 + 87849 0.74 0.201111
Target:  5'- cCGGACCUACCC-CGggaCCugCCCCcCGCg -3'
miRNA:   3'- -GUCUGGGUGGGaGC---GGugGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 87903 0.74 0.201111
Target:  5'- cCGGACCUACCC-CGggaCCugCCCCcCGCg -3'
miRNA:   3'- -GUCUGGGUGGGaGC---GGugGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 78369 0.74 0.20547
Target:  5'- aUAGACCUgcagaagacacucGCCCUCGaCGCCCCgagCACGCa -3'
miRNA:   3'- -GUCUGGG-------------UGGGAGCgGUGGGG---GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 19444 0.74 0.205959
Target:  5'- aUAGGCCC-CCa-CGUCACCCCC-CGCa -3'
miRNA:   3'- -GUCUGGGuGGgaGCGGUGGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 129853 0.74 0.215449
Target:  5'- gGGGCgCGuCCCUucgagagCGCCACCCCCAuCGCc -3'
miRNA:   3'- gUCUGgGU-GGGA-------GCGGUGGGGGU-GCG- -5'
3121 5' -62.5 NC_001493.1 + 14299 0.74 0.215449
Target:  5'- gGGGCgCGuCCCUucgagagCGCCACCCCCAuCGCc -3'
miRNA:   3'- gUCUGgGU-GGGA-------GCGGUGGGGGU-GCG- -5'
3121 5' -62.5 NC_001493.1 + 94495 0.73 0.231736
Target:  5'- -cGACCUcCCCUCGUguCCCCCGCa- -3'
miRNA:   3'- guCUGGGuGGGAGCGguGGGGGUGcg -5'
3121 5' -62.5 NC_001493.1 + 36390 0.73 0.231737
Target:  5'- --aACCCGCCCcacUGagCACCCCCGCGCa -3'
miRNA:   3'- gucUGGGUGGGa--GCg-GUGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 47081 0.73 0.242786
Target:  5'- cCGGugCCACCC-CGCCGCU--CACGCg -3'
miRNA:   3'- -GUCugGGUGGGaGCGGUGGggGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 9310 0.73 0.260179
Target:  5'- aCGGccuCCC-CCCUCGCCGCcauCCCCgggaGCGCg -3'
miRNA:   3'- -GUCu--GGGuGGGAGCGGUG---GGGG----UGCG- -5'
3121 5' -62.5 NC_001493.1 + 124864 0.73 0.260179
Target:  5'- aCGGccuCCC-CCCUCGCCGCcauCCCCgggaGCGCg -3'
miRNA:   3'- -GUCu--GGGuGGGAGCGGUG---GGGG----UGCG- -5'
3121 5' -62.5 NC_001493.1 + 37704 0.72 0.27233
Target:  5'- -cGACCCggucgacgACCC-CuCCAUCCCCGCGCa -3'
miRNA:   3'- guCUGGG--------UGGGaGcGGUGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 119510 0.72 0.297991
Target:  5'- uGGACCCGCacaucaCCUCGaaACCgCCGCGCc -3'
miRNA:   3'- gUCUGGGUG------GGAGCggUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 65153 0.72 0.297991
Target:  5'- -uGAUaggCACCC-CGCCAUCgCCCGCGCg -3'
miRNA:   3'- guCUGg--GUGGGaGCGGUGG-GGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 21226 0.72 0.297991
Target:  5'- aAGGCCCgACCUUCagGCCGCcgCCCCugGUg -3'
miRNA:   3'- gUCUGGG-UGGGAG--CGGUG--GGGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.