miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3121 5' -62.5 NC_001493.1 + 7767 0.67 0.517366
Target:  5'- gGGACCCGCCa-CGCUcCUCUCGCGg -3'
miRNA:   3'- gUCUGGGUGGgaGCGGuGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 66370 0.71 0.347318
Target:  5'- --uGCCCACCCUCGCCcACCguCCCG-GUg -3'
miRNA:   3'- gucUGGGUGGGAGCGG-UGG--GGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 30787 0.7 0.362444
Target:  5'- gGGGCgUugCCgggagCGCCACCCCgACGa -3'
miRNA:   3'- gUCUGgGugGGa----GCGGUGGGGgUGCg -5'
3121 5' -62.5 NC_001493.1 + 8260 0.7 0.397299
Target:  5'- gAGACCCGCgCUCcaGCaccgaugggugggaGCCCCgGCGCg -3'
miRNA:   3'- gUCUGGGUGgGAG--CGg-------------UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 123814 0.7 0.397299
Target:  5'- gAGACCCGCgCUCcaGCaccgaugggugggaGCCCCgGCGCg -3'
miRNA:   3'- gUCUGGGUGgGAG--CGg-------------UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 5134 0.69 0.43596
Target:  5'- gGGACUCACCC--GCCAgCCCCC-CGg -3'
miRNA:   3'- gUCUGGGUGGGagCGGU-GGGGGuGCg -5'
3121 5' -62.5 NC_001493.1 + 120689 0.69 0.43596
Target:  5'- gGGACUCACCC--GCCAgCCCCC-CGg -3'
miRNA:   3'- gUCUGGGUGGGagCGGU-GGGGGuGCg -5'
3121 5' -62.5 NC_001493.1 + 80126 0.68 0.471281
Target:  5'- aUAGGuCCCcgACCCUgGCCAuggacgggauCCCCC-CGCu -3'
miRNA:   3'- -GUCU-GGG--UGGGAgCGGU----------GGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 46767 0.68 0.480337
Target:  5'- cCGGAUCCAUCUUCGaguuCgACCCCCGC-Ca -3'
miRNA:   3'- -GUCUGGGUGGGAGC----GgUGGGGGUGcG- -5'
3121 5' -62.5 NC_001493.1 + 84564 0.71 0.339927
Target:  5'- cCAGACCCGCCUgcccaUGUCAUCCCCGagggggGCu -3'
miRNA:   3'- -GUCUGGGUGGGa----GCGGUGGGGGUg-----CG- -5'
3121 5' -62.5 NC_001493.1 + 110407 0.72 0.304692
Target:  5'- -cGugUguCCCagUCGCCACCCCC-CGCc -3'
miRNA:   3'- guCugGguGGG--AGCGGUGGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 65153 0.72 0.297991
Target:  5'- -uGAUaggCACCC-CGCCAUCgCCCGCGCg -3'
miRNA:   3'- guCUGg--GUGGGaGCGGUGG-GGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 110283 0.75 0.178337
Target:  5'- gGGGCUCaAUCUUCGCCAUCgCCGCGCg -3'
miRNA:   3'- gUCUGGG-UGGGAGCGGUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 57505 0.74 0.200632
Target:  5'- cCAG-CCCGCCCUCGCCGagcaucuCCUCCAUcaugGCa -3'
miRNA:   3'- -GUCuGGGUGGGAGCGGU-------GGGGGUG----CG- -5'
3121 5' -62.5 NC_001493.1 + 102294 0.74 0.201111
Target:  5'- aGGACCgGCCgUCGCgACCCCCcgaccCGCc -3'
miRNA:   3'- gUCUGGgUGGgAGCGgUGGGGGu----GCG- -5'
3121 5' -62.5 NC_001493.1 + 78369 0.74 0.20547
Target:  5'- aUAGACCUgcagaagacacucGCCCUCGaCGCCCCgagCACGCa -3'
miRNA:   3'- -GUCUGGG-------------UGGGAGCgGUGGGG---GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 19444 0.74 0.205959
Target:  5'- aUAGGCCC-CCa-CGUCACCCCC-CGCa -3'
miRNA:   3'- -GUCUGGGuGGgaGCGGUGGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 94495 0.73 0.231736
Target:  5'- -cGACCUcCCCUCGUguCCCCCGCa- -3'
miRNA:   3'- guCUGGGuGGGAGCGguGGGGGUGcg -5'
3121 5' -62.5 NC_001493.1 + 47081 0.73 0.242786
Target:  5'- cCGGugCCACCC-CGCCGCU--CACGCg -3'
miRNA:   3'- -GUCugGGUGGGaGCGGUGGggGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 21226 0.72 0.297991
Target:  5'- aAGGCCCgACCUUCagGCCGCcgCCCCugGUg -3'
miRNA:   3'- gUCUGGG-UGGGAG--CGGUG--GGGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.