miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3121 5' -62.5 NC_001493.1 + 2850 0.69 0.410496
Target:  5'- gAGAaCgGCCCUC-CCACCCCuCACGa -3'
miRNA:   3'- gUCUgGgUGGGAGcGGUGGGG-GUGCg -5'
3121 5' -62.5 NC_001493.1 + 3615 0.66 0.623832
Target:  5'- aAGACCC------GCCGCCCCCGCGa -3'
miRNA:   3'- gUCUGGGugggagCGGUGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 3956 0.72 0.297991
Target:  5'- uGGACCCGCacaucaCCUCGaaACCgCCGCGCc -3'
miRNA:   3'- gUCUGGGUG------GGAGCggUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 4529 0.67 0.540123
Target:  5'- -cGACCCgaauaagaugucgguGaCCCcCGCCGCUgCCGCGCc -3'
miRNA:   3'- guCUGGG---------------U-GGGaGCGGUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 5134 0.69 0.43596
Target:  5'- gGGACUCACCC--GCCAgCCCCC-CGg -3'
miRNA:   3'- gUCUGGGUGGGagCGGU-GGGGGuGCg -5'
3121 5' -62.5 NC_001493.1 + 7767 0.67 0.517366
Target:  5'- gGGACCCGCCa-CGCUcCUCUCGCGg -3'
miRNA:   3'- gUCUGGGUGGgaGCGGuGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 8260 0.7 0.397299
Target:  5'- gAGACCCGCgCUCcaGCaccgaugggugggaGCCCCgGCGCg -3'
miRNA:   3'- gUCUGGGUGgGAG--CGg-------------UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 8352 0.67 0.536306
Target:  5'- gGGGCCgCGCgUCUCGCCcgaccgUCCUCACGCc -3'
miRNA:   3'- gUCUGG-GUG-GGAGCGGu-----GGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 9310 0.73 0.260179
Target:  5'- aCGGccuCCC-CCCUCGCCGCcauCCCCgggaGCGCg -3'
miRNA:   3'- -GUCu--GGGuGGGAGCGGUG---GGGG----UGCG- -5'
3121 5' -62.5 NC_001493.1 + 9965 0.68 0.462312
Target:  5'- gGGAUgCGCCCgCGCCGagcucgacgUCCCCGCGg -3'
miRNA:   3'- gUCUGgGUGGGaGCGGU---------GGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 11517 0.69 0.402216
Target:  5'- aCAGGCCCcuuCUCUCcCC-CCCCCACa- -3'
miRNA:   3'- -GUCUGGGu--GGGAGcGGuGGGGGUGcg -5'
3121 5' -62.5 NC_001493.1 + 14299 0.74 0.215449
Target:  5'- gGGGCgCGuCCCUucgagagCGCCACCCCCAuCGCc -3'
miRNA:   3'- gUCUGgGU-GGGA-------GCGGUGGGGGU-GCG- -5'
3121 5' -62.5 NC_001493.1 + 15071 0.68 0.507996
Target:  5'- uCGGGCCCgcACCCgcacCGCUcccuccgggGCCCCuCGCGUc -3'
miRNA:   3'- -GUCUGGG--UGGGa---GCGG---------UGGGG-GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 15156 0.66 0.623832
Target:  5'- --cACCCGCggCCUCGaucgCACCCCCGaGCu -3'
miRNA:   3'- gucUGGGUG--GGAGCg---GUGGGGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 17611 0.68 0.511735
Target:  5'- aAGGCCCgugggACCCUCgaccucagaggggguGCCcgcACCCUgGCGCg -3'
miRNA:   3'- gUCUGGG-----UGGGAG---------------CGG---UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 18012 0.69 0.43596
Target:  5'- uGGACauuugcgcgaCCAUCCUCGCCGaCCUCACGg -3'
miRNA:   3'- gUCUG----------GGUGGGAGCGGUgGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 18336 0.68 0.498698
Target:  5'- aCGGGuCCUACCUccaccucuUCGUC-CCCCUGCGCc -3'
miRNA:   3'- -GUCU-GGGUGGG--------AGCGGuGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 19444 0.74 0.205959
Target:  5'- aUAGGCCC-CCa-CGUCACCCCC-CGCa -3'
miRNA:   3'- -GUCUGGGuGGgaGCGGUGGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 21226 0.72 0.297991
Target:  5'- aAGGCCCgACCUUCagGCCGCcgCCCCugGUg -3'
miRNA:   3'- gUCUGGG-UGGGAG--CGGUG--GGGGugCG- -5'
3121 5' -62.5 NC_001493.1 + 30520 0.66 0.574853
Target:  5'- -cGAUCC-CCCUUGCCgucaACgCCCCGucCGCg -3'
miRNA:   3'- guCUGGGuGGGAGCGG----UG-GGGGU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.