miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 73374 0.66 0.755414
Target:  5'- cUCGUGgCCCGCGACGUcauccGCGCCa -3'
miRNA:   3'- -GGUACgGGGUGCUGCGcacc-UGCGGc -5'
31213 3' -60 NC_006560.1 + 123916 0.66 0.765463
Target:  5'- gCCGUcGCCCCGCGcugaGCGCaagcggcccccgccGGAgGCCGg -3'
miRNA:   3'- -GGUA-CGGGGUGC----UGCGca------------CCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 104556 0.66 0.764555
Target:  5'- ---aGCUguaCCGCGuguuUGCGUGGACGCuCGa -3'
miRNA:   3'- gguaCGG---GGUGCu---GCGCACCUGCG-GC- -5'
31213 3' -60 NC_006560.1 + 90652 0.66 0.761823
Target:  5'- gCCAUcgGCgCCUACcuGGCGCGcgccgccggccuggUGGGCGCCa -3'
miRNA:   3'- -GGUA--CG-GGGUG--CUGCGC--------------ACCUGCGGc -5'
31213 3' -60 NC_006560.1 + 51609 0.66 0.763645
Target:  5'- gCCGcgGCCUucgacggcgggCGCGGCGagcccgcCGUGGGCGCCu -3'
miRNA:   3'- -GGUa-CGGG-----------GUGCUGC-------GCACCUGCGGc -5'
31213 3' -60 NC_006560.1 + 139303 0.66 0.764555
Target:  5'- -gGUGCCCCguggGCGccucggGCGCGggagaggcGGGCGCCu -3'
miRNA:   3'- ggUACGGGG----UGC------UGCGCa-------CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 21591 0.66 0.764555
Target:  5'- cCCcUGCCCCcugcuuccGCGccuGCGCGcGG-CGCCGc -3'
miRNA:   3'- -GGuACGGGG--------UGC---UGCGCaCCuGCGGC- -5'
31213 3' -60 NC_006560.1 + 112426 0.66 0.755414
Target:  5'- gCCggGCCCgGCGugGUgcaggccacGUGGcGCGUCGu -3'
miRNA:   3'- -GGuaCGGGgUGCugCG---------CACC-UGCGGC- -5'
31213 3' -60 NC_006560.1 + 118241 0.66 0.764555
Target:  5'- aCCcgGUCCgCGCGG-GCGcGGAcCGCCGc -3'
miRNA:   3'- -GGuaCGGG-GUGCUgCGCaCCU-GCGGC- -5'
31213 3' -60 NC_006560.1 + 50194 0.66 0.764555
Target:  5'- uCCAcgGCCCCG-GACGCccccGGGCGgCGg -3'
miRNA:   3'- -GGUa-CGGGGUgCUGCGca--CCUGCgGC- -5'
31213 3' -60 NC_006560.1 + 39361 0.66 0.764555
Target:  5'- cCCcgGCCCCgGCGGCcccgGCGccgGGACccccggGCCGa -3'
miRNA:   3'- -GGuaCGGGG-UGCUG----CGCa--CCUG------CGGC- -5'
31213 3' -60 NC_006560.1 + 39578 0.66 0.755414
Target:  5'- -gGUGCgCCCA-GACGUcgGUGGcgggcGCGCCGg -3'
miRNA:   3'- ggUACG-GGGUgCUGCG--CACC-----UGCGGC- -5'
31213 3' -60 NC_006560.1 + 108021 0.66 0.769988
Target:  5'- ---cGCCgCCGCGACGCGgagcaccgucucGGCGUCGg -3'
miRNA:   3'- gguaCGG-GGUGCUGCGCac----------CUGCGGC- -5'
31213 3' -60 NC_006560.1 + 1118 0.66 0.755414
Target:  5'- ---aGCCCCGCGACGCGccccccuccGGC-CCGg -3'
miRNA:   3'- gguaCGGGGUGCUGCGCac-------CUGcGGC- -5'
31213 3' -60 NC_006560.1 + 57134 0.66 0.764555
Target:  5'- aCCAcGa-CCGCGGgGCGUcGGCGCCGa -3'
miRNA:   3'- -GGUaCggGGUGCUgCGCAcCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 22276 0.66 0.764555
Target:  5'- ---cGCCCCcgccgaccccggGCGGCGCGccGcACGCCGg -3'
miRNA:   3'- gguaCGGGG------------UGCUGCGCacC-UGCGGC- -5'
31213 3' -60 NC_006560.1 + 77016 0.66 0.759083
Target:  5'- aCC-UGCCCC-CGugGgCGgucgacgaguuccgGGGCGCCc -3'
miRNA:   3'- -GGuACGGGGuGCugC-GCa-------------CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 8947 0.66 0.764555
Target:  5'- uUAUGCgCCGCGGgGCGccGACGUCa -3'
miRNA:   3'- gGUACGgGGUGCUgCGCacCUGCGGc -5'
31213 3' -60 NC_006560.1 + 27162 0.66 0.755414
Target:  5'- gCCggGCCCUcccgcgGCGGCGCGcgcgcGGAaaaaaaCGCCGg -3'
miRNA:   3'- -GGuaCGGGG------UGCUGCGCa----CCU------GCGGC- -5'
31213 3' -60 NC_006560.1 + 139384 0.66 0.799956
Target:  5'- cCCAc-CCCCAgGAgGCGaGGACGgCGa -3'
miRNA:   3'- -GGUacGGGGUgCUgCGCaCCUGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.