miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 161 0.68 0.679365
Target:  5'- uCCcgGCCCCGCccCGCGgucccGGcccCGCCGg -3'
miRNA:   3'- -GGuaCGGGGUGcuGCGCa----CCu--GCGGC- -5'
31213 3' -60 NC_006560.1 + 247 0.67 0.70837
Target:  5'- gCggGCCCCAacuGCGUcucgGUGGAgGCCGg -3'
miRNA:   3'- gGuaCGGGGUgc-UGCG----CACCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 486 0.66 0.791296
Target:  5'- uCCcgGCCCCcguCGGucucgcucuccCGCcacGGGCGCCGg -3'
miRNA:   3'- -GGuaCGGGGu--GCU-----------GCGca-CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 668 0.68 0.659836
Target:  5'- cCCcgGCgcgCCCGCGGCGCG-GGcuCGUCGc -3'
miRNA:   3'- -GGuaCG---GGGUGCUGCGCaCCu-GCGGC- -5'
31213 3' -60 NC_006560.1 + 909 0.67 0.73684
Target:  5'- gCCGgccGCUCC-CGGCG-GUGGAgGCCu -3'
miRNA:   3'- -GGUa--CGGGGuGCUGCgCACCUgCGGc -5'
31213 3' -60 NC_006560.1 + 1118 0.66 0.755414
Target:  5'- ---aGCCCCGCGACGCGccccccuccGGC-CCGg -3'
miRNA:   3'- gguaCGGGGUGCUGCGCac-------CUGcGGC- -5'
31213 3' -60 NC_006560.1 + 1479 0.7 0.562087
Target:  5'- ---cGCCCCAUcggaGGCGCGcGGcccACGCCGg -3'
miRNA:   3'- gguaCGGGGUG----CUGCGCaCC---UGCGGC- -5'
31213 3' -60 NC_006560.1 + 2413 0.68 0.650037
Target:  5'- gUCggGCCCCA-GGCGCGUGcGcACGCgGu -3'
miRNA:   3'- -GGuaCGGGGUgCUGCGCAC-C-UGCGgC- -5'
31213 3' -60 NC_006560.1 + 3250 0.67 0.73684
Target:  5'- gCggGCCCgGgCGGCGCGcGG-CGCCa -3'
miRNA:   3'- gGuaCGGGgU-GCUGCGCaCCuGCGGc -5'
31213 3' -60 NC_006560.1 + 3591 0.68 0.679365
Target:  5'- gCggGCCagcaGCGGCGCG-GcGGCGCCGg -3'
miRNA:   3'- gGuaCGGgg--UGCUGCGCaC-CUGCGGC- -5'
31213 3' -60 NC_006560.1 + 3802 0.67 0.71793
Target:  5'- gCCA-GCCCgggCACGGCgGCGaGGuCGCCGc -3'
miRNA:   3'- -GGUaCGGG---GUGCUG-CGCaCCuGCGGC- -5'
31213 3' -60 NC_006560.1 + 4430 0.7 0.53336
Target:  5'- ---cGCCCaCACgGGCGCG-GGcGCGCCGg -3'
miRNA:   3'- gguaCGGG-GUG-CUGCGCaCC-UGCGGC- -5'
31213 3' -60 NC_006560.1 + 5659 0.76 0.258804
Target:  5'- gCCGgcuccGCCCCGgGGCGCGgGGGCgGCCGg -3'
miRNA:   3'- -GGUa----CGGGGUgCUGCGCaCCUG-CGGC- -5'
31213 3' -60 NC_006560.1 + 6075 0.68 0.640225
Target:  5'- gCCGcGCCCgcuCGCGcccuCGCGUcgaGGGCGCCGc -3'
miRNA:   3'- -GGUaCGGG---GUGCu---GCGCA---CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 7250 0.67 0.70837
Target:  5'- aUcgGCCCgACGccCGCGUGcGcCGCCGa -3'
miRNA:   3'- gGuaCGGGgUGCu-GCGCAC-CuGCGGC- -5'
31213 3' -60 NC_006560.1 + 8947 0.66 0.764555
Target:  5'- uUAUGCgCCGCGGgGCGccGACGUCa -3'
miRNA:   3'- gGUACGgGGUGCUgCGCacCUGCGGc -5'
31213 3' -60 NC_006560.1 + 9179 0.68 0.659836
Target:  5'- cCUcgGgCCCGCGACggGCGUcaGCGCCGg -3'
miRNA:   3'- -GGuaCgGGGUGCUG--CGCAccUGCGGC- -5'
31213 3' -60 NC_006560.1 + 9560 0.67 0.727423
Target:  5'- gCCA-GCCCCAgGGcCGCGccgaaGACGCCc -3'
miRNA:   3'- -GGUaCGGGGUgCU-GCGCac---CUGCGGc -5'
31213 3' -60 NC_006560.1 + 9683 0.67 0.727423
Target:  5'- ---cGCUCCACGAcCGCGUuccGGuaccuCGCCGc -3'
miRNA:   3'- gguaCGGGGUGCU-GCGCA---CCu----GCGGC- -5'
31213 3' -60 NC_006560.1 + 10520 0.67 0.749881
Target:  5'- aCCAcGCCgCCAucaaccggggggcgcCGACGCacUGGGCGUCGa -3'
miRNA:   3'- -GGUaCGG-GGU---------------GCUGCGc-ACCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.