miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 126908 0.84 0.077796
Target:  5'- aCggGCCCCACGACGCgGUGGugGgCCGg -3'
miRNA:   3'- gGuaCGGGGUGCUGCG-CACCugC-GGC- -5'
31213 3' -60 NC_006560.1 + 60955 0.81 0.13225
Target:  5'- aCGUGCUCCACGACGcCGcGGAgGCCGu -3'
miRNA:   3'- gGUACGGGGUGCUGC-GCaCCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 22746 0.81 0.134235
Target:  5'- cCCGUGCCCCugGACGCcgacgaggccucGGGCGCCu -3'
miRNA:   3'- -GGUACGGGGugCUGCGca----------CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 132037 0.76 0.247175
Target:  5'- cCCcgGCCgCCGCGcuGCGCGgcgGGGCGCUGc -3'
miRNA:   3'- -GGuaCGG-GGUGC--UGCGCa--CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 5659 0.76 0.258804
Target:  5'- gCCGgcuccGCCCCGgGGCGCGgGGGCgGCCGg -3'
miRNA:   3'- -GGUa----CGGGGUgCUGCGCaCCUG-CGGC- -5'
31213 3' -60 NC_006560.1 + 68099 0.76 0.264784
Target:  5'- aCCGagGCCCCGgggGACGCGggggaGGACGCCGu -3'
miRNA:   3'- -GGUa-CGGGGUg--CUGCGCa----CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 16528 0.76 0.277079
Target:  5'- gCA-GCUCCGCGGCGCuG-GGGCGCCGc -3'
miRNA:   3'- gGUaCGGGGUGCUGCG-CaCCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 45278 0.75 0.289826
Target:  5'- -gGUGCCCCGgGgguacGCGCGgaGGACGCCGu -3'
miRNA:   3'- ggUACGGGGUgC-----UGCGCa-CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 54753 0.75 0.29637
Target:  5'- aCCcgGCCCCGCagGGCGCGaGGccccACGCCGc -3'
miRNA:   3'- -GGuaCGGGGUG--CUGCGCaCC----UGCGGC- -5'
31213 3' -60 NC_006560.1 + 142344 0.75 0.29637
Target:  5'- gCCggGCCCCGCG-CGCGccucGGGgGCCGg -3'
miRNA:   3'- -GGuaCGGGGUGCuGCGCa---CCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 43873 0.75 0.29902
Target:  5'- gCCAgcgggGCCCCGCGACccagggccuccugcaGCGcgGGACGUCGu -3'
miRNA:   3'- -GGUa----CGGGGUGCUG---------------CGCa-CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 51145 0.74 0.323691
Target:  5'- uCCGcUGCCUCGCGGCGCGcgaGGcCGCCu -3'
miRNA:   3'- -GGU-ACGGGGUGCUGCGCa--CCuGCGGc -5'
31213 3' -60 NC_006560.1 + 84685 0.74 0.323691
Target:  5'- --cUGCCCCgccuGCGGCGCGggcgacGGGCGCCu -3'
miRNA:   3'- gguACGGGG----UGCUGCGCa-----CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 18333 0.74 0.330808
Target:  5'- gUCGUGCgcgcggccgaCCUGCGGCGCGUGGccGCGCCc -3'
miRNA:   3'- -GGUACG----------GGGUGCUGCGCACC--UGCGGc -5'
31213 3' -60 NC_006560.1 + 82739 0.74 0.330808
Target:  5'- gCCggGCCCCGgGACgGCGgacgaGGACGUCGa -3'
miRNA:   3'- -GGuaCGGGGUgCUG-CGCa----CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 135056 0.74 0.345385
Target:  5'- gCUcgGCCaCCGCGGCGaCGUcggcgucggGGGCGCCGc -3'
miRNA:   3'- -GGuaCGG-GGUGCUGC-GCA---------CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 149756 0.73 0.368102
Target:  5'- aCCGacCCCCGgGGCGCGgGGGCGUCGa -3'
miRNA:   3'- -GGUacGGGGUgCUGCGCaCCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 142538 0.73 0.368102
Target:  5'- cCCggGCCCgGCGgccggGCGCGUcGGACGCgGg -3'
miRNA:   3'- -GGuaCGGGgUGC-----UGCGCA-CCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 113453 0.73 0.368102
Target:  5'- cCUGUGCgCCGCGGCGCccgacgcGGGCGCCa -3'
miRNA:   3'- -GGUACGgGGUGCUGCGca-----CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 70710 0.73 0.368102
Target:  5'- gCCAcggGCCCC-CGGCGCGUGGccgaguuCGuCCGg -3'
miRNA:   3'- -GGUa--CGGGGuGCUGCGCACCu------GC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.