miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 3' -65.7 NC_006560.1 + 12522 0.66 0.479827
Target:  5'- gGCGGucgccgggucaguaGGGCGuGUcCCggcgCCGCgCCGUCg -3'
miRNA:   3'- gCGCC--------------CCCGC-CAaGGa---GGCGgGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 29702 0.66 0.491353
Target:  5'- aCGaCGGGGGCcg--CgaCCGCCCCGcCu -3'
miRNA:   3'- -GC-GCCCCCGccaaGgaGGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 11184 0.66 0.473675
Target:  5'- uCGCGGGGGCcucGGacUCCUCCGagauCgCgGUCa -3'
miRNA:   3'- -GCGCCCCCG---CCa-AGGAGGCg---G-GgCAG- -5'
31231 3' -65.7 NC_006560.1 + 46734 0.66 0.482475
Target:  5'- cCGcCGGGccCGGUcgccuucgccgUCCUCCGCucCCCGUCc -3'
miRNA:   3'- -GC-GCCCccGCCA-----------AGGAGGCG--GGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 684 0.66 0.491353
Target:  5'- gCGCGGGcucgucGCGGgccccgUCCccccccgCgGCCCCGUCc -3'
miRNA:   3'- -GCGCCCc-----CGCCa-----AGGa------GgCGGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 46005 0.66 0.490462
Target:  5'- cCGuCGGGGGCGcGUgcaCCaCCGCgcagaagUCCGUCg -3'
miRNA:   3'- -GC-GCCCCCGC-CAa--GGaGGCG-------GGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 145469 0.66 0.482475
Target:  5'- -cCGGGGGgGG---CUCCGCCCCcuguGUCc -3'
miRNA:   3'- gcGCCCCCgCCaagGAGGCGGGG----CAG- -5'
31231 3' -65.7 NC_006560.1 + 128688 0.66 0.483359
Target:  5'- gGCGGGGGCGcgcucggagccggUCUUCaCGCCCaugcuccugaaccaCGUCg -3'
miRNA:   3'- gCGCCCCCGCca-----------AGGAG-GCGGG--------------GCAG- -5'
31231 3' -65.7 NC_006560.1 + 67983 0.66 0.491353
Target:  5'- aCGCGGGGGCcgcGGcgCCgucgggcgaCGCCCCc-- -3'
miRNA:   3'- -GCGCCCCCG---CCaaGGag-------GCGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 57524 0.66 0.482475
Target:  5'- gGUGGuGGGUGucgUCCgccaggaCCGCCgCCGUCg -3'
miRNA:   3'- gCGCC-CCCGCca-AGGa------GGCGG-GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 127295 0.66 0.494926
Target:  5'- uGCGGGGGUGcggccacgcccccgcGaaCCUCgGCCgUGUCg -3'
miRNA:   3'- gCGCCCCCGC---------------CaaGGAGgCGGgGCAG- -5'
31231 3' -65.7 NC_006560.1 + 149328 0.66 0.518423
Target:  5'- gGCGGGccggagacggcGGCGGcUCCUCCccGCCgCGg- -3'
miRNA:   3'- gCGCCC-----------CCGCCaAGGAGG--CGGgGCag -5'
31231 3' -65.7 NC_006560.1 + 1891 0.66 0.478945
Target:  5'- uCGCGGGcGGCGGcgccggcuaccagUCCUcggcggCCGCCggcucgCCGUCc -3'
miRNA:   3'- -GCGCCC-CCGCCa------------AGGA------GGCGG------GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 8305 0.66 0.489572
Target:  5'- gGUGGGuGUGGUcccuuucgcgcaCCUCUGcCCCCGUCu -3'
miRNA:   3'- gCGCCCcCGCCAa-----------GGAGGC-GGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 26104 0.66 0.482475
Target:  5'- gGCGGGGGCuucgcgGGggCUUCgcggggGCCCCGcCg -3'
miRNA:   3'- gCGCCCCCG------CCaaGGAGg-----CGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 122652 0.66 0.464956
Target:  5'- cCGCGGGGG-GGccgCUgaccgCCGCCCCc-- -3'
miRNA:   3'- -GCGCCCCCgCCaa-GGa----GGCGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 19572 0.66 0.491353
Target:  5'- gGCGGcaccGGGCGGcgCCgCgGCCCgcuCGUCg -3'
miRNA:   3'- gCGCC----CCCGCCaaGGaGgCGGG---GCAG- -5'
31231 3' -65.7 NC_006560.1 + 32236 0.66 0.473675
Target:  5'- --aGGGGGCGGagCC-CC-CCCCGg- -3'
miRNA:   3'- gcgCCCCCGCCaaGGaGGcGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 6327 0.66 0.499408
Target:  5'- -cCGGGGacgccgcGCGGgcgCC-CCGCCCCGg- -3'
miRNA:   3'- gcGCCCC-------CGCCaa-GGaGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 130871 0.66 0.482475
Target:  5'- uCGCGGuucGGGCcgaGGggUUCUCgGCCCCGg- -3'
miRNA:   3'- -GCGCC---CCCG---CCa-AGGAGgCGGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.