miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 3' -65.7 NC_006560.1 + 149328 0.66 0.518423
Target:  5'- gGCGGGccggagacggcGGCGGcUCCUCCccGCCgCGg- -3'
miRNA:   3'- gCGCCC-----------CCGCCaAGGAGG--CGGgGCag -5'
31231 3' -65.7 NC_006560.1 + 114150 0.74 0.149887
Target:  5'- aCGCGGccGCGGUcuUCCUCCGCaacgCCGUCg -3'
miRNA:   3'- -GCGCCccCGCCA--AGGAGGCGg---GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 73180 0.74 0.153506
Target:  5'- gCGCGGGGGCGGagggcccggCCUCgGCCCUc-- -3'
miRNA:   3'- -GCGCCCCCGCCaa-------GGAGgCGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 80100 0.74 0.160982
Target:  5'- cCGCGGGGGCGGgugagCCgacgggcgCCGCUCCa-- -3'
miRNA:   3'- -GCGCCCCCGCCaa---GGa-------GGCGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 118250 0.73 0.172812
Target:  5'- gCGCGGGcGCGGaccgCCgcgCCGCCCCGg- -3'
miRNA:   3'- -GCGCCCcCGCCaa--GGa--GGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 46368 0.73 0.176925
Target:  5'- gGCGGGcGCGGggCCgaguacgugUCCGCCCCGg- -3'
miRNA:   3'- gCGCCCcCGCCaaGG---------AGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 35961 0.73 0.185411
Target:  5'- gCGCGGGGGCGGggCUUguuaacuuucCCGCCaCCuUCg -3'
miRNA:   3'- -GCGCCCCCGCCaaGGA----------GGCGG-GGcAG- -5'
31231 3' -65.7 NC_006560.1 + 5169 0.73 0.185411
Target:  5'- cCGCGGGGGCGGg-CCgcggcgacggCgGCCCCGa- -3'
miRNA:   3'- -GCGCCCCCGCCaaGGa---------GgCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 51981 0.73 0.188026
Target:  5'- gGCGGGcGGCGGgccugCCggcgcggugaccgCCGCCCCGcCa -3'
miRNA:   3'- gCGCCC-CCGCCaa---GGa------------GGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 26283 0.75 0.139492
Target:  5'- cCGcCGGGgagccuGGCGGgcggCUUCUGCCCCGUCg -3'
miRNA:   3'- -GC-GCCC------CCGCCaa--GGAGGCGGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 106578 0.75 0.139492
Target:  5'- -uCGGGGGcCGGggCCUggCCGCCCCGgUCg -3'
miRNA:   3'- gcGCCCCC-GCCaaGGA--GGCGGGGC-AG- -5'
31231 3' -65.7 NC_006560.1 + 150455 0.75 0.129762
Target:  5'- gCGCGGguuuGGGCGGggCCggccCCGCCCCG-Cg -3'
miRNA:   3'- -GCGCC----CCCGCCaaGGa---GGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 102004 0.78 0.077463
Target:  5'- cCGgGGGGGCGG-UCCUCCGCCggaCCG-Ca -3'
miRNA:   3'- -GCgCCCCCGCCaAGGAGGCGG---GGCaG- -5'
31231 3' -65.7 NC_006560.1 + 15078 0.77 0.104218
Target:  5'- gGCGGGGGCucuGGccCCUCCGCCUCGg- -3'
miRNA:   3'- gCGCCCCCG---CCaaGGAGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 118045 0.76 0.109451
Target:  5'- gGCGGGGGCGGgcCCggcgCCGCCgCGg- -3'
miRNA:   3'- gCGCCCCCGCCaaGGa---GGCGGgGCag -5'
31231 3' -65.7 NC_006560.1 + 17570 0.76 0.112159
Target:  5'- uCGuCGGGGGCGucaucguccguGUcgUCCUCCGCCCCGc- -3'
miRNA:   3'- -GC-GCCCCCGC-----------CA--AGGAGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 100667 0.76 0.114929
Target:  5'- cCGCGGGGGgGaGcgCCgCCGCCaCCGUCu -3'
miRNA:   3'- -GCGCCCCCgC-CaaGGaGGCGG-GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 5676 0.75 0.12666
Target:  5'- gCGCGGGGGCGG--CCggcggcgCCGC-CCGUCg -3'
miRNA:   3'- -GCGCCCCCGCCaaGGa------GGCGgGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 4998 0.75 0.129762
Target:  5'- aGcCGGGGGCGGggugCCcgUCGCCgCCGUCg -3'
miRNA:   3'- gC-GCCCCCGCCaa--GGa-GGCGG-GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 126 0.75 0.129762
Target:  5'- gCGCGGguuuGGGCGGggCCggccCCGCCCCG-Cg -3'
miRNA:   3'- -GCGCC----CCCGCCaaGGa---GGCGGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.