miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 3' -65.7 NC_006560.1 + 69 0.71 0.233393
Target:  5'- gGCGGguccGGGCGGgcCCUCCccgcGCCCCG-Cg -3'
miRNA:   3'- gCGCC----CCCGCCaaGGAGG----CGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 126 0.75 0.129762
Target:  5'- gCGCGGguuuGGGCGGggCCggccCCGCCCCG-Cg -3'
miRNA:   3'- -GCGCC----CCCGCCaaGGa---GGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 521 0.7 0.310872
Target:  5'- gCGCcgGGGGGCGGcggCCggcCgCGCCCCGg- -3'
miRNA:   3'- -GCG--CCCCCGCCaa-GGa--G-GCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 684 0.66 0.491353
Target:  5'- gCGCGGGcucgucGCGGgccccgUCCccccccgCgGCCCCGUCc -3'
miRNA:   3'- -GCGCCCc-----CGCCa-----AGGa------GgCGGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 1005 0.73 0.189788
Target:  5'- gGCcGGGGCGccgUCUCCGCCCCGcCg -3'
miRNA:   3'- gCGcCCCCGCcaaGGAGGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 1218 0.68 0.375123
Target:  5'- -cCGGGGGCGGggCCcCUGCCgCGcCc -3'
miRNA:   3'- gcGCCCCCGCCaaGGaGGCGGgGCaG- -5'
31231 3' -65.7 NC_006560.1 + 1891 0.66 0.478945
Target:  5'- uCGCGGGcGGCGGcgccggcuaccagUCCUcggcggCCGCCggcucgCCGUCc -3'
miRNA:   3'- -GCGCCC-CCGCCa------------AGGA------GGCGG------GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 1973 0.68 0.406425
Target:  5'- gGCGGGGGCGGggcucggggCCgggCCaGCUCCa-- -3'
miRNA:   3'- gCGCCCCCGCCaa-------GGa--GG-CGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 2172 0.68 0.367556
Target:  5'- gCGCGGcGGGCaGggCCUCgGgCCCGg- -3'
miRNA:   3'- -GCGCC-CCCGcCaaGGAGgCgGGGCag -5'
31231 3' -65.7 NC_006560.1 + 4546 0.73 0.189788
Target:  5'- -cCGGGGGCGGgggCUCgGCCCCGg- -3'
miRNA:   3'- gcGCCCCCGCCaagGAGgCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 4998 0.75 0.129762
Target:  5'- aGcCGGGGGCGGggugCCcgUCGCCgCCGUCg -3'
miRNA:   3'- gC-GCCCCCGCCaa--GGa-GGCGG-GGCAG- -5'
31231 3' -65.7 NC_006560.1 + 5169 0.73 0.185411
Target:  5'- cCGCGGGGGCGGg-CCgcggcgacggCgGCCCCGa- -3'
miRNA:   3'- -GCGCCCCCGCCaaGGa---------GgCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 5641 0.69 0.31758
Target:  5'- gGCGacGGGCGGcgCCcggccggcUCCGCCCCGg- -3'
miRNA:   3'- gCGCc-CCCGCCaaGG--------AGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 5676 0.75 0.12666
Target:  5'- gCGCGGGGGCGG--CCggcggcgCCGC-CCGUCg -3'
miRNA:   3'- -GCGCCCCCGCCaaGGa------GGCGgGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 6327 0.66 0.499408
Target:  5'- -cCGGGGacgccgcGCGGgcgCC-CCGCCCCGg- -3'
miRNA:   3'- gcGCCCC-------CGCCaa-GGaGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 6359 0.71 0.233393
Target:  5'- cCGCccuucGGGGCGGgcCCgCCGCCCCGcCc -3'
miRNA:   3'- -GCGc----CCCCGCCaaGGaGGCGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 8305 0.66 0.489572
Target:  5'- gGUGGGuGUGGUcccuuucgcgcaCCUCUGcCCCCGUCu -3'
miRNA:   3'- gCGCCCcCGCCAa-----------GGAGGC-GGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 8545 0.67 0.422678
Target:  5'- gGUGGGGGUGGggCgaCUGUggcugcggcgauCCCGUCa -3'
miRNA:   3'- gCGCCCCCGCCaaGgaGGCG------------GGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 8674 0.66 0.509331
Target:  5'- uCGCcGGcGGCGGcgCCUgaGCgCCGUCu -3'
miRNA:   3'- -GCGcCC-CCGCCaaGGAggCGgGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 9609 0.68 0.382794
Target:  5'- gCGCGGGGcGCGGccCCUggggCCGCgCCGa- -3'
miRNA:   3'- -GCGCCCC-CGCCaaGGA----GGCGgGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.