miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 149336 0.69 0.620297
Target:  5'- gGAGACGGcggcggcuccuccccGCCGCGGGgaggaGCCgGGCGGc -3'
miRNA:   3'- -UUCUGCC---------------UGGCGUCCa----UGGgCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 144355 0.74 0.3417
Target:  5'- cGAGACGG-CCGCGGG-GCCgCGGCGGc -3'
miRNA:   3'- -UUCUGCCuGGCGUCCaUGG-GCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 142687 0.72 0.459653
Target:  5'- -cGGCGGACCGgAGGgggcGCCCGGCc-- -3'
miRNA:   3'- uuCUGCCUGGCgUCCa---UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 140750 0.66 0.792947
Target:  5'- cAGGGCGuGGCU-CAGGUcuucaaggaACCCGGCGGUg -3'
miRNA:   3'- -UUCUGC-CUGGcGUCCA---------UGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 135386 0.66 0.810666
Target:  5'- gGGGGCGGagGCCGCGGGggugucGCUCGGCc-- -3'
miRNA:   3'- -UUCUGCC--UGGCGUCCa-----UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 132694 0.68 0.687162
Target:  5'- cGGGGCGGACCgGCAGccgaaagACCCGGCu-- -3'
miRNA:   3'- -UUCUGCCUGG-CGUCca-----UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 132221 0.69 0.595959
Target:  5'- gGAGGCGGugUugcGCGGGgcCCUGGCGGg -3'
miRNA:   3'- -UUCUGCCugG---CGUCCauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 131174 0.71 0.526157
Target:  5'- -cGGCGGccGCCGCGGGggcGCCCGGCc-- -3'
miRNA:   3'- uuCUGCC--UGGCGUCCa--UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 130254 0.67 0.764376
Target:  5'- -uGGCGGuggcgucgagcgaGCUGCAGGccuucuacggGCCCGGCGAg -3'
miRNA:   3'- uuCUGCC-------------UGGCGUCCa---------UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 127612 0.68 0.697182
Target:  5'- cGAGugGGucCCcCGGGUacACCCGAUGGUg -3'
miRNA:   3'- -UUCugCCu-GGcGUCCA--UGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 125457 0.72 0.432538
Target:  5'- cGGGCGGcACCGCAc--GCCCGACGAg -3'
miRNA:   3'- uUCUGCC-UGGCGUccaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 125170 0.68 0.677097
Target:  5'- uGGGCGGACgCGCGGG---CCGGCGGc -3'
miRNA:   3'- uUCUGCCUG-GCGUCCaugGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 121987 0.66 0.792947
Target:  5'- --uGCGGGCCGCGGuGUACCgGGaggaGAc -3'
miRNA:   3'- uucUGCCUGGCGUC-CAUGGgCUg---CUa -5'
31231 5' -58.3 NC_006560.1 + 121928 0.71 0.516414
Target:  5'- cGGGAUGGACCGCGGGc-CCgGGCGc- -3'
miRNA:   3'- -UUCUGCCUGGCGUCCauGGgCUGCua -5'
31231 5' -58.3 NC_006560.1 + 119607 0.66 0.819291
Target:  5'- -cGGCGGGgcCCG-AGGgcCCCGACGGc -3'
miRNA:   3'- uuCUGCCU--GGCgUCCauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 119233 0.66 0.801882
Target:  5'- -cGACGGACCGCccaaucgucguGGUcUUCGGCGGUg -3'
miRNA:   3'- uuCUGCCUGGCGu----------CCAuGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 118048 0.66 0.819291
Target:  5'- gGGGGCGGgcccggcgccGCCGCGGGcgccCCCGcCGAg -3'
miRNA:   3'- -UUCUGCC----------UGGCGUCCau--GGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 112946 0.67 0.765316
Target:  5'- -cGACGGccucaugcGCCGCGcGGaGCUCGACGGUc -3'
miRNA:   3'- uuCUGCC--------UGGCGU-CCaUGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 112575 0.73 0.406378
Target:  5'- cGGGGCguucgaGGACCGCGGGUAcCCCGugGu- -3'
miRNA:   3'- -UUCUG------CCUGGCGUCCAU-GGGCugCua -5'
31231 5' -58.3 NC_006560.1 + 111044 0.69 0.595959
Target:  5'- cGGGACGGACCGCAc---CCCGuCGAg -3'
miRNA:   3'- -UUCUGCCUGGCGUccauGGGCuGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.