miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 3' -54.8 NC_006560.1 + 3167 0.66 0.936916
Target:  5'- aGAGcGGGUGGuccgagagcUCGGCGAcgACGcGCGGCu -3'
miRNA:   3'- gCUC-UCCGCU---------AGCCGCUa-UGC-UGCUG- -5'
31247 3' -54.8 NC_006560.1 + 132958 0.66 0.941628
Target:  5'- --cGAGGCGGUCGcGUGGgccCGGgGGCa -3'
miRNA:   3'- gcuCUCCGCUAGC-CGCUau-GCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 51975 0.66 0.936916
Target:  5'- cCGGGcGGCGggCGGCGGgccUGcCGGCg -3'
miRNA:   3'- -GCUCuCCGCuaGCCGCUau-GCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 76367 0.66 0.936916
Target:  5'- gCGGGuggcGGCGAUccCGGCGAccGCGGCcaaGACg -3'
miRNA:   3'- -GCUCu---CCGCUA--GCCGCUa-UGCUG---CUG- -5'
31247 3' -54.8 NC_006560.1 + 147630 0.66 0.938829
Target:  5'- gGGGAGGCGGugcguccagaugaagUccaCGGCGGUGcCGGCGcGCa -3'
miRNA:   3'- gCUCUCCGCU---------------A---GCCGCUAU-GCUGC-UG- -5'
31247 3' -54.8 NC_006560.1 + 132220 0.66 0.935945
Target:  5'- -cGGAGGCGGUguugcgcggggcccUGGCGGggcuguggggcgaggACGGCGGCu -3'
miRNA:   3'- gcUCUCCGCUA--------------GCCGCUa--------------UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 143389 0.66 0.941628
Target:  5'- cCGGGGGGCGG-CGGCccu-CGGCG-Ca -3'
miRNA:   3'- -GCUCUCCGCUaGCCGcuauGCUGCuG- -5'
31247 3' -54.8 NC_006560.1 + 42053 0.66 0.946106
Target:  5'- gGAGGGGCGGaggCGGCcuccgcggGCGGgGGCu -3'
miRNA:   3'- gCUCUCCGCUa--GCCGcua-----UGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 11205 0.66 0.945668
Target:  5'- cCGAGAucGCGGUCaGCGAcggcaccgcggucUGCGACGGg -3'
miRNA:   3'- -GCUCUc-CGCUAGcCGCU-------------AUGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 106434 0.66 0.936916
Target:  5'- cCGcGGAGGCGGUCgcgGGCGAc-CGcCGGCu -3'
miRNA:   3'- -GC-UCUCCGCUAG---CCGCUauGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 50396 0.66 0.946106
Target:  5'- aCGAG-GGCGAcuacccgGGCGcgGCGGgGGCg -3'
miRNA:   3'- -GCUCuCCGCUag-----CCGCuaUGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 100088 0.66 0.941628
Target:  5'- gGAGguAGGUGugccCGGCGAUGCcggccugccGGCGGCg -3'
miRNA:   3'- gCUC--UCCGCua--GCCGCUAUG---------CUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 16642 0.66 0.935456
Target:  5'- cCGGGcGGCGGUugcgcgccgcccggUGGCGGUACuGCGAg -3'
miRNA:   3'- -GCUCuCCGCUA--------------GCCGCUAUGcUGCUg -5'
31247 3' -54.8 NC_006560.1 + 1487 0.66 0.936916
Target:  5'- -cGGAGGCGcgCGGCcc-ACGcCGGCg -3'
miRNA:   3'- gcUCUCCGCuaGCCGcuaUGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 17492 0.66 0.941628
Target:  5'- gGGGGGGUGGggcuggagCGcGCGGggcCGGCGGCg -3'
miRNA:   3'- gCUCUCCGCUa-------GC-CGCUau-GCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 144354 0.66 0.936916
Target:  5'- gCGAGAcGGCcg-CGGgGccGCGGCGGCa -3'
miRNA:   3'- -GCUCU-CCGcuaGCCgCuaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 39454 0.66 0.946106
Target:  5'- aCGGcgcuGcGCGGUCGGCGccgccggcGCGGCGACg -3'
miRNA:   3'- -GCUcu--C-CGCUAGCCGCua------UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 74888 0.66 0.958159
Target:  5'- cCGAGGccaucaacgccGGCGGcgCGGCcGUcGCGACGGCc -3'
miRNA:   3'- -GCUCU-----------CCGCUa-GCCGcUA-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 14205 0.66 0.946106
Target:  5'- gCGuGGGGUGGUCgGGCGggGCGcccGCGGu -3'
miRNA:   3'- -GCuCUCCGCUAG-CCGCuaUGC---UGCUg -5'
31247 3' -54.8 NC_006560.1 + 146819 0.66 0.941628
Target:  5'- --cGGGGCGGggucugggugUgGGCGugcUGCGGCGGCg -3'
miRNA:   3'- gcuCUCCGCU----------AgCCGCu--AUGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.