miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 3' -54.8 NC_006560.1 + 116525 0.84 0.16715
Target:  5'- gCGuGGAGGCGggCGGCGAUgGCGACGGCc -3'
miRNA:   3'- -GC-UCUCCGCuaGCCGCUA-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 99614 0.82 0.236295
Target:  5'- gCGGGGGGCGGcUGGCGGUccGCGGCGAUg -3'
miRNA:   3'- -GCUCUCCGCUaGCCGCUA--UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 147062 0.82 0.236295
Target:  5'- gGGGAGGCGggCGGCGAguCGGCGAUc -3'
miRNA:   3'- gCUCUCCGCuaGCCGCUauGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 66752 0.8 0.299271
Target:  5'- cCGGGuGGCGGagGGCGAggACGACGGCc -3'
miRNA:   3'- -GCUCuCCGCUagCCGCUa-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 34559 0.79 0.358458
Target:  5'- gGGGGGGCGGcCGGgGGUGCG-CGACg -3'
miRNA:   3'- gCUCUCCGCUaGCCgCUAUGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3217 0.78 0.366408
Target:  5'- uCGAG-GGCGG-CGGCGGcggGCGGCGGCg -3'
miRNA:   3'- -GCUCuCCGCUaGCCGCUa--UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 14371 0.78 0.399405
Target:  5'- gGuGGGGCGAggcgaGGCGggGCGACGACc -3'
miRNA:   3'- gCuCUCCGCUag---CCGCuaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 9078 0.77 0.434241
Target:  5'- gGGGAGG-GG-CGGCGggGCGACGGCg -3'
miRNA:   3'- gCUCUCCgCUaGCCGCuaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 15053 0.76 0.470776
Target:  5'- cCGGGGGGCGAcggcgUCGGUGGgggGCGGgGGCu -3'
miRNA:   3'- -GCUCUCCGCU-----AGCCGCUa--UGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 57188 0.76 0.499173
Target:  5'- -cGGAGGCGAgcgCGGCG--GCGACGAg -3'
miRNA:   3'- gcUCUCCGCUa--GCCGCuaUGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 75143 0.75 0.518522
Target:  5'- cCGAccuGGCGG-CGGCGGUGCGGCGGg -3'
miRNA:   3'- -GCUcu-CCGCUaGCCGCUAUGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 55026 0.75 0.518522
Target:  5'- gGAaAGGCGcgCGGCGAgACGAgCGACg -3'
miRNA:   3'- gCUcUCCGCuaGCCGCUaUGCU-GCUG- -5'
31247 3' -54.8 NC_006560.1 + 75338 0.75 0.558049
Target:  5'- uGGGcaAGGUGGUCggGGCGAcGCGGCGGCg -3'
miRNA:   3'- gCUC--UCCGCUAG--CCGCUaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 52324 0.74 0.568072
Target:  5'- gGAGGGGCucGUCGGCGcgGcCGugGGCg -3'
miRNA:   3'- gCUCUCCGc-UAGCCGCuaU-GCugCUG- -5'
31247 3' -54.8 NC_006560.1 + 2699 0.74 0.578139
Target:  5'- aCGAcGAGGCGG-CGGCcg-GCGGCGGCc -3'
miRNA:   3'- -GCU-CUCCGCUaGCCGcuaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 33817 0.74 0.578139
Target:  5'- aCGGGGGGCGGgggUCGGCGGggguCGGCcGCg -3'
miRNA:   3'- -GCUCUCCGCU---AGCCGCUau--GCUGcUG- -5'
31247 3' -54.8 NC_006560.1 + 26496 0.74 0.578139
Target:  5'- gCGGGGGGCGggCGcGCGAggggGCGGgGGCc -3'
miRNA:   3'- -GCUCUCCGCuaGC-CGCUa---UGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 147104 0.74 0.588245
Target:  5'- gCGGGGGGCGggCGcGCGAcGCGggccGCGGCg -3'
miRNA:   3'- -GCUCUCCGCuaGC-CGCUaUGC----UGCUG- -5'
31247 3' -54.8 NC_006560.1 + 146075 0.74 0.588245
Target:  5'- gGGGAGGCGGgagCGGCGGgcccACuGCGGCu -3'
miRNA:   3'- gCUCUCCGCUa--GCCGCUa---UGcUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2861 0.74 0.588245
Target:  5'- cCGcAGAGGCGGUUGGCcagcGCGGCGAg -3'
miRNA:   3'- -GC-UCUCCGCUAGCCGcua-UGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.