miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 3' -54.8 NC_006560.1 + 1487 0.66 0.936916
Target:  5'- -cGGAGGCGcgCGGCcc-ACGcCGGCg -3'
miRNA:   3'- gcUCUCCGCuaGCCGcuaUGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 1871 0.69 0.846623
Target:  5'- gCGGGGGucGCGggCGGgGGUcgcggGCGGCGGCg -3'
miRNA:   3'- -GCUCUC--CGCuaGCCgCUA-----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2006 0.67 0.926783
Target:  5'- aGGGcGGCGGcguccUCGGCGu--CGGCGAg -3'
miRNA:   3'- gCUCuCCGCU-----AGCCGCuauGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 2357 0.67 0.931968
Target:  5'- uCGAGcgcGGGCagcacgGcgCGGCGGUacucgcGCGGCGGCa -3'
miRNA:   3'- -GCUC---UCCG------CuaGCCGCUA------UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2547 0.71 0.749003
Target:  5'- -cGGAGGCGAgcaCGGCGcgGCGcaggucgcgcGCGGCg -3'
miRNA:   3'- gcUCUCCGCUa--GCCGCuaUGC----------UGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2625 0.66 0.950351
Target:  5'- aGGGcAGGUaGAcgUGGCGGcgcGCGACGACg -3'
miRNA:   3'- gCUC-UCCG-CUa-GCCGCUa--UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2699 0.74 0.578139
Target:  5'- aCGAcGAGGCGG-CGGCcg-GCGGCGGCc -3'
miRNA:   3'- -GCU-CUCCGCUaGCCGcuaUGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 2861 0.74 0.588245
Target:  5'- cCGcAGAGGCGGUUGGCcagcGCGGCGAg -3'
miRNA:   3'- -GC-UCUCCGCUAGCCGcua-UGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 2896 0.66 0.958159
Target:  5'- gGAGAGGCcgccgcGcgCGGCGGUccaGGCGGg -3'
miRNA:   3'- gCUCUCCG------CuaGCCGCUAug-CUGCUg -5'
31247 3' -54.8 NC_006560.1 + 3167 0.66 0.936916
Target:  5'- aGAGcGGGUGGuccgagagcUCGGCGAcgACGcGCGGCu -3'
miRNA:   3'- gCUC-UCCGCU---------AGCCGCUa-UGC-UGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3217 0.78 0.366408
Target:  5'- uCGAG-GGCGG-CGGCGGcggGCGGCGGCg -3'
miRNA:   3'- -GCUCuCCGCUaGCCGCUa--UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3335 0.72 0.669618
Target:  5'- gCGGGcGGGCGGcgUCGGCGucgGCGuCGGCg -3'
miRNA:   3'- -GCUC-UCCGCU--AGCCGCua-UGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3480 0.72 0.689821
Target:  5'- gCGGGcGGCGucggcGUCGGCGu--CGGCGGCg -3'
miRNA:   3'- -GCUCuCCGC-----UAGCCGCuauGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3542 0.67 0.915703
Target:  5'- aGAGcAGGuCGG-CGGCGGcgGCGcCGACg -3'
miRNA:   3'- gCUC-UCC-GCUaGCCGCUa-UGCuGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3619 0.7 0.813285
Target:  5'- gCGAcGAGGCccaCGGCGcgcacgGCGGCGACg -3'
miRNA:   3'- -GCU-CUCCGcuaGCCGCua----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3884 0.68 0.897319
Target:  5'- cCGcGGcGGCG-UCGGCGGcguCGGCGGCg -3'
miRNA:   3'- -GCuCU-CCGCuAGCCGCUau-GCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 3934 0.71 0.728606
Target:  5'- gCGGGGGcggcgccGCGGUCGGCGGcgAgGGCGGCc -3'
miRNA:   3'- -GCUCUC-------CGCUAGCCGCUa-UgCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 4021 0.73 0.618724
Target:  5'- -cGGGGGCGGcggCGGCGucccgggGCGGCGGCg -3'
miRNA:   3'- gcUCUCCGCUa--GCCGCua-----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 4732 0.66 0.958159
Target:  5'- -cGGcGGCGAcgcccgucUCGGCGGcggcccGCGGCGGCg -3'
miRNA:   3'- gcUCuCCGCU--------AGCCGCUa-----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 4843 0.69 0.849794
Target:  5'- cCGAGucgacGGCGccggCGGCGAgguucgcgucgacgGCGGCGGCg -3'
miRNA:   3'- -GCUCu----CCGCua--GCCGCUa-------------UGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.