miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 54537 0.74 0.38463
Target:  5'- cGACGCc-GUCCGAGgGGC--GCAGGCa -3'
miRNA:   3'- -CUGCGucUAGGCUCgCCGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 104405 0.74 0.392931
Target:  5'- -cUGCAGA-CCG-GCGGCUCgugGCGGGCc -3'
miRNA:   3'- cuGCGUCUaGGCuCGCCGAG---UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 16277 0.74 0.392931
Target:  5'- cGCGCGGAgacggCCGAccccuggggcGCGGCggggCGCGGGCc -3'
miRNA:   3'- cUGCGUCUa----GGCU----------CGCCGa---GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 20895 0.73 0.427274
Target:  5'- cGGCGCGGcguucCCGGGCGGUgggCGCGGaGCg -3'
miRNA:   3'- -CUGCGUCua---GGCUCGCCGa--GUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 59007 0.73 0.436134
Target:  5'- cGAUGCGGA-CCGGGcCGGCgCGCuGGCc -3'
miRNA:   3'- -CUGCGUCUaGGCUC-GCCGaGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 103038 0.73 0.4451
Target:  5'- cGCGCGGggCgCGGGCGGCcgcUCGgGGGCc -3'
miRNA:   3'- cUGCGUCuaG-GCUCGCCG---AGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3050 0.73 0.457822
Target:  5'- aGGCGCGGAgcggcCCGAGggcgcggccggagccCGGCUCggGCGGGCc -3'
miRNA:   3'- -CUGCGUCUa----GGCUC---------------GCCGAG--UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 33636 0.72 0.472596
Target:  5'- gGGCGgGGGgcgCCGggGGCGGC-CGCGGGCc -3'
miRNA:   3'- -CUGCgUCUa--GGC--UCGCCGaGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 134535 0.72 0.481951
Target:  5'- gGACGCGGcagaCgCGGGCGuGCUCGCGGaGCg -3'
miRNA:   3'- -CUGCGUCua--G-GCUCGC-CGAGUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 51898 0.72 0.481951
Target:  5'- gGugGCGGAuaUCCGgucgcaguuucGGCGGCuccUCAUGGGCg -3'
miRNA:   3'- -CugCGUCU--AGGC-----------UCGCCG---AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 69549 0.72 0.491395
Target:  5'- gGugGgAGAguucgagucggCCGAGCGGCgguucggCGCGGGCc -3'
miRNA:   3'- -CugCgUCUa----------GGCUCGCCGa------GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 99876 0.72 0.491395
Target:  5'- gGGCGCGGGggUCGuGGCGGCg-GCGGGCg -3'
miRNA:   3'- -CUGCGUCUa-GGC-UCGCCGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 17334 0.72 0.500924
Target:  5'- aGACGCAGcccUCCGAGCccGGCgUCA-GGGCg -3'
miRNA:   3'- -CUGCGUCu--AGGCUCG--CCG-AGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 1604 0.72 0.520218
Target:  5'- cGACGCGG--CCGGcGCGcGCUCuGCGGGCu -3'
miRNA:   3'- -CUGCGUCuaGGCU-CGC-CGAG-UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 139715 0.71 0.529974
Target:  5'- gGACGCGGgGUCgGGGCGGaUCGCgcucuGGGCg -3'
miRNA:   3'- -CUGCGUC-UAGgCUCGCCgAGUG-----UCCG- -5'
31249 5' -57.7 NC_006560.1 + 102945 0.71 0.529974
Target:  5'- cGGCGCGG-UgCGcGCGGCUCACucGGGUc -3'
miRNA:   3'- -CUGCGUCuAgGCuCGCCGAGUG--UCCG- -5'
31249 5' -57.7 NC_006560.1 + 3418 0.71 0.529974
Target:  5'- --gGCGGG--CGGGCGGCgggCGCGGGCg -3'
miRNA:   3'- cugCGUCUagGCUCGCCGa--GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3249 0.71 0.529974
Target:  5'- --gGCGGGcCCGGGCGGCgCGCGGcGCc -3'
miRNA:   3'- cugCGUCUaGGCUCGCCGaGUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 34611 0.71 0.539797
Target:  5'- gGGgGguGG-CCGcGCGGCUCGgGGGCg -3'
miRNA:   3'- -CUgCguCUaGGCuCGCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 2119 0.71 0.54968
Target:  5'- cGGCGCGGcgUCGGGgucCGGCUCGggcaGGGCg -3'
miRNA:   3'- -CUGCGUCuaGGCUC---GCCGAGUg---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.