miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 73472 0.81 0.152569
Target:  5'- cGCGCGGcuGUCCGAGUGGCUCcuggagcgcucGCGGGCc -3'
miRNA:   3'- cUGCGUC--UAGGCUCGCCGAG-----------UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 34454 0.79 0.205877
Target:  5'- cGGCGguGGUCgCGGGgGGCguUCGCGGGCg -3'
miRNA:   3'- -CUGCguCUAG-GCUCgCCG--AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 44768 0.78 0.226951
Target:  5'- gGACGUGGccaucgCCGAGCgGGCUCugGGGCu -3'
miRNA:   3'- -CUGCGUCua----GGCUCG-CCGAGugUCCG- -5'
31249 5' -57.7 NC_006560.1 + 34656 0.78 0.238158
Target:  5'- cGCGCGGcggCCGGGCGGgUCGCGGGg -3'
miRNA:   3'- cUGCGUCua-GGCUCGCCgAGUGUCCg -5'
31249 5' -57.7 NC_006560.1 + 51963 0.77 0.261958
Target:  5'- gGGCGCAcguGUCCGGGCGGCgggCgGCGGGCc -3'
miRNA:   3'- -CUGCGUc--UAGGCUCGCCGa--G-UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 1869 0.77 0.274567
Target:  5'- gGGCGgGGGUCgCGGGCGGgggUCGCGGGCg -3'
miRNA:   3'- -CUGCgUCUAG-GCUCGCCg--AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 58833 0.77 0.274567
Target:  5'- aGGCGCAGcugcacGUCgGGGCGGCcCugGGGCa -3'
miRNA:   3'- -CUGCGUC------UAGgCUCGCCGaGugUCCG- -5'
31249 5' -57.7 NC_006560.1 + 45715 0.76 0.287657
Target:  5'- uGACGUAGAUCCc-GCGGC--GCAGGCg -3'
miRNA:   3'- -CUGCGUCUAGGcuCGCCGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 77430 0.76 0.294384
Target:  5'- cGGCGCuGccGUCCGAGgGGCUCG-AGGCg -3'
miRNA:   3'- -CUGCGuC--UAGGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 18823 0.76 0.308205
Target:  5'- cACGCGGGUgcgUCGGGCGGCUcCGCgAGGCc -3'
miRNA:   3'- cUGCGUCUA---GGCUCGCCGA-GUG-UCCG- -5'
31249 5' -57.7 NC_006560.1 + 13151 0.76 0.315299
Target:  5'- gGACGUAGGUCCccGCGGuCUCgaagGCGGGCg -3'
miRNA:   3'- -CUGCGUCUAGGcuCGCC-GAG----UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 19319 0.75 0.337316
Target:  5'- uGCGCAGAaaCGuGCGGCcgCACGGGUa -3'
miRNA:   3'- cUGCGUCUagGCuCGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 27386 0.75 0.352605
Target:  5'- cGGCGCGGGgggCCGggcccucccgcGGCGGCgcgcgCGCGGGCc -3'
miRNA:   3'- -CUGCGUCUa--GGC-----------UCGCCGa----GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 1357 0.75 0.352605
Target:  5'- cGCGCGGGUCCcccGCGGCcCGCAcGGCg -3'
miRNA:   3'- cUGCGUCUAGGcu-CGCCGaGUGU-CCG- -5'
31249 5' -57.7 NC_006560.1 + 142197 0.75 0.358071
Target:  5'- aGGCGCGGccUCCGGGCGGCgCGCcaccagagccauuaGGGCa -3'
miRNA:   3'- -CUGCGUCu-AGGCUCGCCGaGUG--------------UCCG- -5'
31249 5' -57.7 NC_006560.1 + 142442 0.75 0.368379
Target:  5'- cGGCGCGGcggCCGcGCGGCccCGCAGGUg -3'
miRNA:   3'- -CUGCGUCua-GGCuCGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 53016 0.75 0.368379
Target:  5'- gGAC-CGGGggCCGGGCGGCacCACGGGCu -3'
miRNA:   3'- -CUGcGUCUa-GGCUCGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 131798 0.74 0.375633
Target:  5'- cGACGCGGAUCggcuCGAGgGGUUCccgcagcGCGGGCc -3'
miRNA:   3'- -CUGCGUCUAG----GCUCgCCGAG-------UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 65937 0.74 0.376445
Target:  5'- -cCGCAGGUCCGgccgccAGCGGU--ACAGGCg -3'
miRNA:   3'- cuGCGUCUAGGC------UCGCCGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 131160 0.74 0.38463
Target:  5'- cGCGCGGcUCUGGGCGGCggccgccgCGgGGGCg -3'
miRNA:   3'- cUGCGUCuAGGCUCGCCGa-------GUgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.