Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31249 | 5' | -57.7 | NC_006560.1 | + | 125045 | 0.66 | 0.854696 |
Target: 5'- uGGCGCGGcggucgCCG-GCGGaCUUcCGGGCc -3' miRNA: 3'- -CUGCGUCua----GGCuCGCC-GAGuGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 27386 | 0.75 | 0.352605 |
Target: 5'- cGGCGCGGGgggCCGggcccucccgcGGCGGCgcgcgCGCGGGCc -3' miRNA: 3'- -CUGCGUCUa--GGC-----------UCGCCGa----GUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 1357 | 0.75 | 0.352605 |
Target: 5'- cGCGCGGGUCCcccGCGGCcCGCAcGGCg -3' miRNA: 3'- cUGCGUCUAGGcu-CGCCGaGUGU-CCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 142197 | 0.75 | 0.358071 |
Target: 5'- aGGCGCGGccUCCGGGCGGCgCGCcaccagagccauuaGGGCa -3' miRNA: 3'- -CUGCGUCu-AGGCUCGCCGaGUG--------------UCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 53016 | 0.75 | 0.368379 |
Target: 5'- gGAC-CGGGggCCGGGCGGCacCACGGGCu -3' miRNA: 3'- -CUGcGUCUa-GGCUCGCCGa-GUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 142442 | 0.75 | 0.368379 |
Target: 5'- cGGCGCGGcggCCGcGCGGCccCGCAGGUg -3' miRNA: 3'- -CUGCGUCua-GGCuCGCCGa-GUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 131798 | 0.74 | 0.375633 |
Target: 5'- cGACGCGGAUCggcuCGAGgGGUUCccgcagcGCGGGCc -3' miRNA: 3'- -CUGCGUCUAG----GCUCgCCGAG-------UGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 65937 | 0.74 | 0.376445 |
Target: 5'- -cCGCAGGUCCGgccgccAGCGGU--ACAGGCg -3' miRNA: 3'- cuGCGUCUAGGC------UCGCCGagUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 54537 | 0.74 | 0.38463 |
Target: 5'- cGACGCc-GUCCGAGgGGC--GCAGGCa -3' miRNA: 3'- -CUGCGucUAGGCUCgCCGagUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 19319 | 0.75 | 0.337316 |
Target: 5'- uGCGCAGAaaCGuGCGGCcgCACGGGUa -3' miRNA: 3'- cUGCGUCUagGCuCGCCGa-GUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 13151 | 0.76 | 0.315299 |
Target: 5'- gGACGUAGGUCCccGCGGuCUCgaagGCGGGCg -3' miRNA: 3'- -CUGCGUCUAGGcuCGCC-GAG----UGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 18823 | 0.76 | 0.308205 |
Target: 5'- cACGCGGGUgcgUCGGGCGGCUcCGCgAGGCc -3' miRNA: 3'- cUGCGUCUA---GGCUCGCCGA-GUG-UCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 34454 | 0.79 | 0.205877 |
Target: 5'- cGGCGguGGUCgCGGGgGGCguUCGCGGGCg -3' miRNA: 3'- -CUGCguCUAG-GCUCgCCG--AGUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 44768 | 0.78 | 0.226951 |
Target: 5'- gGACGUGGccaucgCCGAGCgGGCUCugGGGCu -3' miRNA: 3'- -CUGCGUCua----GGCUCG-CCGAGugUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 34656 | 0.78 | 0.238158 |
Target: 5'- cGCGCGGcggCCGGGCGGgUCGCGGGg -3' miRNA: 3'- cUGCGUCua-GGCUCGCCgAGUGUCCg -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 51963 | 0.77 | 0.261958 |
Target: 5'- gGGCGCAcguGUCCGGGCGGCgggCgGCGGGCc -3' miRNA: 3'- -CUGCGUc--UAGGCUCGCCGa--G-UGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 58833 | 0.77 | 0.274567 |
Target: 5'- aGGCGCAGcugcacGUCgGGGCGGCcCugGGGCa -3' miRNA: 3'- -CUGCGUC------UAGgCUCGCCGaGugUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 1869 | 0.77 | 0.274567 |
Target: 5'- gGGCGgGGGUCgCGGGCGGgggUCGCGGGCg -3' miRNA: 3'- -CUGCgUCUAG-GCUCGCCg--AGUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 45715 | 0.76 | 0.287657 |
Target: 5'- uGACGUAGAUCCc-GCGGC--GCAGGCg -3' miRNA: 3'- -CUGCGUCUAGGcuCGCCGagUGUCCG- -5' |
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31249 | 5' | -57.7 | NC_006560.1 | + | 77430 | 0.76 | 0.294384 |
Target: 5'- cGGCGCuGccGUCCGAGgGGCUCG-AGGCg -3' miRNA: 3'- -CUGCGuC--UAGGCUCgCCGAGUgUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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