miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 125045 0.66 0.854696
Target:  5'- uGGCGCGGcggucgCCG-GCGGaCUUcCGGGCc -3'
miRNA:   3'- -CUGCGUCua----GGCuCGCC-GAGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 146988 0.66 0.830636
Target:  5'- --gGCGGggCauGGCGGCUCGC-GGCc -3'
miRNA:   3'- cugCGUCuaGgcUCGCCGAGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 6621 0.66 0.830636
Target:  5'- -uCGgGGGaCCGGG-GGCUCGgGGGCu -3'
miRNA:   3'- cuGCgUCUaGGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 130536 0.66 0.822251
Target:  5'- cGCGCGGcgCCGcGCugGGCguggacgCGCAGGUc -3'
miRNA:   3'- cUGCGUCuaGGCuCG--CCGa------GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 118356 0.66 0.822251
Target:  5'- cGACGC----CgGGGCGGUgcUCGCGGGCc -3'
miRNA:   3'- -CUGCGucuaGgCUCGCCG--AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 117316 0.66 0.813696
Target:  5'- gGGCGCGGAgggUGAGCGGU---CGGGCc -3'
miRNA:   3'- -CUGCGUCUag-GCUCGCCGaguGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 37674 0.66 0.813696
Target:  5'- -cCGCGGAUCCG-GCcGCgC-CGGGCg -3'
miRNA:   3'- cuGCGUCUAGGCuCGcCGaGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 115203 0.66 0.822251
Target:  5'- -cCGCAGAcgcuuUCCc-GCGGUgaucgCGCGGGCg -3'
miRNA:   3'- cuGCGUCU-----AGGcuCGCCGa----GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3320 0.66 0.813696
Target:  5'- -cCGCGGG-CCGGGgGcGCggGCGGGCg -3'
miRNA:   3'- cuGCGUCUaGGCUCgC-CGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 50205 0.66 0.813696
Target:  5'- gGACGCcc--CCGGGCGGCg-GCGGcGCg -3'
miRNA:   3'- -CUGCGucuaGGCUCGCCGagUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 19569 0.66 0.822251
Target:  5'- gGAgGCGGcaCCGGGCGGCgcCGC-GGCc -3'
miRNA:   3'- -CUgCGUCuaGGCUCGCCGa-GUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 149473 0.66 0.813696
Target:  5'- aGGCgGCAGAcggCCG-GCGGC-C-CGGGCc -3'
miRNA:   3'- -CUG-CGUCUa--GGCuCGCCGaGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 76835 0.66 0.822251
Target:  5'- gGGCGCccucgggccaAGAgcgCCGAGCGGg-CGgGGGCc -3'
miRNA:   3'- -CUGCG----------UCUa--GGCUCGCCgaGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 26393 0.66 0.828138
Target:  5'- gGGCGCAGGggcgcgcccCCGGGCGuGCaggccuagugaagaUCGgGGGCg -3'
miRNA:   3'- -CUGCGUCUa--------GGCUCGC-CG--------------AGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 11114 0.66 0.830636
Target:  5'- gGGCGgGGGg--GGGgGGCUCAgCGGGCg -3'
miRNA:   3'- -CUGCgUCUaggCUCgCCGAGU-GUCCG- -5'
31249 5' -57.7 NC_006560.1 + 66986 0.66 0.813696
Target:  5'- cGugGUGGccGUCUGGcGCGGCgUCGCgaGGGCg -3'
miRNA:   3'- -CugCGUC--UAGGCU-CGCCG-AGUG--UCCG- -5'
31249 5' -57.7 NC_006560.1 + 54498 0.66 0.813696
Target:  5'- uGCGCAGcgCCGGGCc-CUCGCAGa- -3'
miRNA:   3'- cUGCGUCuaGGCUCGccGAGUGUCcg -5'
31249 5' -57.7 NC_006560.1 + 121937 0.66 0.822251
Target:  5'- -cCGCGGGcCCGGGCGcGCggcucugCGCcGGCg -3'
miRNA:   3'- cuGCGUCUaGGCUCGC-CGa------GUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 11617 0.66 0.812831
Target:  5'- cGGCGgGGGagucgcuUCCGGG-GGCUCggcgguccggGCGGGCg -3'
miRNA:   3'- -CUGCgUCU-------AGGCUCgCCGAG----------UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 10226 0.66 0.813696
Target:  5'- aGGgGUAGGggUGGGCGGCgggggCGCGGGUc -3'
miRNA:   3'- -CUgCGUCUagGCUCGCCGa----GUGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.