miRNA display CGI


Results 1 - 20 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 66 0.67 0.804979
Target:  5'- uGGgGCGGGUCCGGGCGGgccCUC-CccGCg -3'
miRNA:   3'- -CUgCGUCUAGGCUCGCC---GAGuGucCG- -5'
31249 5' -57.7 NC_006560.1 + 124 0.67 0.759254
Target:  5'- cGGCGCGGGUuuGGGCGGg--GCcGGCc -3'
miRNA:   3'- -CUGCGUCUAggCUCGCCgagUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 218 0.67 0.768656
Target:  5'- -cCGCGGGagggcCCGGcccGCGGCUCgguGCGGGCc -3'
miRNA:   3'- cuGCGUCUa----GGCU---CGCCGAG---UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 773 0.68 0.700836
Target:  5'- cGGCGCGGGUCCuuucuGGGCcucgGGUUCGCuuccGGCc -3'
miRNA:   3'- -CUGCGUCUAGG-----CUCG----CCGAGUGu---CCG- -5'
31249 5' -57.7 NC_006560.1 + 1357 0.75 0.352605
Target:  5'- cGCGCGGGUCCcccGCGGCcCGCAcGGCg -3'
miRNA:   3'- cUGCGUCUAGGcu-CGCCGaGUGU-CCG- -5'
31249 5' -57.7 NC_006560.1 + 1604 0.72 0.520218
Target:  5'- cGACGCGG--CCGGcGCGcGCUCuGCGGGCu -3'
miRNA:   3'- -CUGCGUCuaGGCU-CGC-CGAG-UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 1869 0.77 0.274567
Target:  5'- gGGCGgGGGUCgCGGGCGGgggUCGCGGGCg -3'
miRNA:   3'- -CUGCgUCUAG-GCUCGCCg--AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 2119 0.71 0.54968
Target:  5'- cGGCGCGGcgUCGGGgucCGGCUCGggcaGGGCg -3'
miRNA:   3'- -CUGCGUCuaGGCUC---GCCGAGUg---UCCG- -5'
31249 5' -57.7 NC_006560.1 + 2330 0.67 0.794316
Target:  5'- cGCGCGGGcgagUCG-GCGGCgcggccgucgagCGCGGGCa -3'
miRNA:   3'- cUGCGUCUa---GGCuCGCCGa-----------GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 2465 0.69 0.660633
Target:  5'- aGGCGCGGcggcggcgcGUCgGGGUagaGGCgcgCGCAGGCg -3'
miRNA:   3'- -CUGCGUC---------UAGgCUCG---CCGa--GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 2564 0.7 0.598794
Target:  5'- cGGCGCAGGUCgCGcGCGGCgggccagcggacgUCGCAcugcgcGGCg -3'
miRNA:   3'- -CUGCGUCUAG-GCuCGCCG-------------AGUGU------CCG- -5'
31249 5' -57.7 NC_006560.1 + 2703 0.67 0.804979
Target:  5'- cGAgGCGGcggCCG-GCGGCggccgccaGCAGGCc -3'
miRNA:   3'- -CUgCGUCua-GGCuCGCCGag------UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3013 0.69 0.690849
Target:  5'- uGGCGCA--UCCaGGCGGCggCGCGGcGCa -3'
miRNA:   3'- -CUGCGUcuAGGcUCGCCGa-GUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 3050 0.73 0.457822
Target:  5'- aGGCGCGGAgcggcCCGAGggcgcggccggagccCGGCUCggGCGGGCc -3'
miRNA:   3'- -CUGCGUCUa----GGCUC---------------GCCGAG--UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3249 0.71 0.529974
Target:  5'- --gGCGGGcCCGGGCGGCgCGCGGcGCc -3'
miRNA:   3'- cugCGUCUaGGCUCGCCGaGUGUC-CG- -5'
31249 5' -57.7 NC_006560.1 + 3320 0.66 0.813696
Target:  5'- -cCGCGGG-CCGGGgGcGCggGCGGGCg -3'
miRNA:   3'- cuGCGUCUaGGCUCgC-CGagUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3418 0.71 0.529974
Target:  5'- --gGCGGG--CGGGCGGCgggCGCGGGCg -3'
miRNA:   3'- cugCGUCUagGCUCGCCGa--GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3491 0.67 0.783446
Target:  5'- cGGCGuCGGcgUCG-GCGGCguccagcagggggCGCAGGCu -3'
miRNA:   3'- -CUGC-GUCuaGGCuCGCCGa------------GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3721 0.7 0.599805
Target:  5'- aGGCGCAGcUCgCGcAGCcaGGCgCGCGGGCg -3'
miRNA:   3'- -CUGCGUCuAG-GC-UCG--CCGaGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3759 0.67 0.777938
Target:  5'- gGGCGCGGcggcgCCGcGCGGCgggacCGCGGcGCg -3'
miRNA:   3'- -CUGCGUCua---GGCuCGCCGa----GUGUC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.