miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3126 5' -51.5 NC_001493.1 + 33406 0.66 0.991285
Target:  5'- ---uCGUCCUCUCGGgcGAUgCGGGu- -3'
miRNA:   3'- cuuuGCAGGAGAGCUa-CUAgGCCUgc -5'
3126 5' -51.5 NC_001493.1 + 4134 0.66 0.990038
Target:  5'- ----aGUCCUUUCGcgGGaacggguuuUCCGGugGu -3'
miRNA:   3'- cuuugCAGGAGAGCuaCU---------AGGCCugC- -5'
3126 5' -51.5 NC_001493.1 + 119688 0.66 0.990038
Target:  5'- ----aGUCCUUUCGcgGGaacggguuuUCCGGugGu -3'
miRNA:   3'- cuuugCAGGAGAGCuaCU---------AGGCCugC- -5'
3126 5' -51.5 NC_001493.1 + 66134 0.66 0.988657
Target:  5'- cGAAGCGgggUgaCUCGAUGGgaacaUCCGcGACGg -3'
miRNA:   3'- -CUUUGCa--GgaGAGCUACU-----AGGC-CUGC- -5'
3126 5' -51.5 NC_001493.1 + 13057 0.66 0.988657
Target:  5'- cGggGuCGcCCUCUgGGUGAUCgUGGcACGg -3'
miRNA:   3'- -CuuU-GCaGGAGAgCUACUAG-GCC-UGC- -5'
3126 5' -51.5 NC_001493.1 + 128612 0.66 0.988657
Target:  5'- cGggGuCGcCCUCUgGGUGAUCgUGGcACGg -3'
miRNA:   3'- -CuuU-GCaGGAGAgCUACUAG-GCC-UGC- -5'
3126 5' -51.5 NC_001493.1 + 85946 0.66 0.987131
Target:  5'- gGAGACGcaccggaUCUCaacaUCGAUGAgcucCCGGACGg -3'
miRNA:   3'- -CUUUGCa------GGAG----AGCUACUa---GGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 42715 0.66 0.985451
Target:  5'- ----gGUCCUCUCG-UGGUCaGGAgGg -3'
miRNA:   3'- cuuugCAGGAGAGCuACUAGgCCUgC- -5'
3126 5' -51.5 NC_001493.1 + 21699 0.67 0.97963
Target:  5'- --cACGUCCucguggcagaacucUCUCGGUaggaccacgggauccGAUCUGGGCGa -3'
miRNA:   3'- cuuUGCAGG--------------AGAGCUA---------------CUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 76470 0.67 0.979403
Target:  5'- cGAGAcCGUUCUCuUCGAUGAcaUGGugGa -3'
miRNA:   3'- -CUUU-GCAGGAG-AGCUACUagGCCugC- -5'
3126 5' -51.5 NC_001493.1 + 131265 0.67 0.976269
Target:  5'- -cAGC-UCUUCUCGGUGAgcgcaucgagacccUCCGGGCc -3'
miRNA:   3'- cuUUGcAGGAGAGCUACU--------------AGGCCUGc -5'
3126 5' -51.5 NC_001493.1 + 98903 0.68 0.965455
Target:  5'- cGGGAUGUCCUUUCGGuugaUGAUCCcGAg- -3'
miRNA:   3'- -CUUUGCAGGAGAGCU----ACUAGGcCUgc -5'
3126 5' -51.5 NC_001493.1 + 90831 0.68 0.965455
Target:  5'- cGAACGgCCUCUCGAcucgGAgCCGG-CGg -3'
miRNA:   3'- cUUUGCaGGAGAGCUa---CUaGGCCuGC- -5'
3126 5' -51.5 NC_001493.1 + 44713 0.68 0.965455
Target:  5'- aAAACGUCgUCccggaGAUGAgCCGGAUGg -3'
miRNA:   3'- cUUUGCAGgAGag---CUACUaGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 116861 0.68 0.965455
Target:  5'- gGAAGCGggcaCCg--CGGUGAcUCCGGAUGa -3'
miRNA:   3'- -CUUUGCa---GGagaGCUACU-AGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 1307 0.68 0.965455
Target:  5'- gGAAGCGggcaCCg--CGGUGAcUCCGGAUGa -3'
miRNA:   3'- -CUUUGCa---GGagaGCUACU-AGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 83523 0.68 0.962019
Target:  5'- ---cUG-CCUgaaCGAUGAUCCGGACGa -3'
miRNA:   3'- cuuuGCaGGAga-GCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 114292 0.68 0.962019
Target:  5'- --cGCGUCCUCccaGAUGGUCCcguucaGACGa -3'
miRNA:   3'- cuuUGCAGGAGag-CUACUAGGc-----CUGC- -5'
3126 5' -51.5 NC_001493.1 + 100989 0.68 0.954449
Target:  5'- cGGAGCGUCCcCUCGAUGAcaguagcgCCGuGAa- -3'
miRNA:   3'- -CUUUGCAGGaGAGCUACUa-------GGC-CUgc -5'
3126 5' -51.5 NC_001493.1 + 15616 0.69 0.941285
Target:  5'- gGAGACGUCCUCUaccaacccGUGAUCCacgagcgaugcGGGCa -3'
miRNA:   3'- -CUUUGCAGGAGAgc------UACUAGG-----------CCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.