miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 5' -56.2 NC_006560.1 + 48223 0.66 0.922175
Target:  5'- gCU-CGAGGaCCUGGgcuUCGGgGACgGGCc -3'
miRNA:   3'- -GAuGCUCUaGGACC---AGCCgCUGgCUG- -5'
31261 5' -56.2 NC_006560.1 + 50124 0.66 0.916579
Target:  5'- cCUGCGGuccGUCuUUGGgggCGGCGAcuCCGACg -3'
miRNA:   3'- -GAUGCUc--UAG-GACCa--GCCGCU--GGCUG- -5'
31261 5' -56.2 NC_006560.1 + 28168 0.66 0.916007
Target:  5'- cCUGCGG--UCCUGGggugagUCGGUggucccgGGCCGGCg -3'
miRNA:   3'- -GAUGCUcuAGGACC------AGCCG-------CUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 52446 0.66 0.913109
Target:  5'- --cCGAGAgCCUGGUCguggacggcauaacgGGCGACCc-- -3'
miRNA:   3'- gauGCUCUaGGACCAG---------------CCGCUGGcug -5'
31261 5' -56.2 NC_006560.1 + 107287 0.66 0.91075
Target:  5'- -gGCGAGAUCaccuccgcgCUGGUCGuCGACUcgGACc -3'
miRNA:   3'- gaUGCUCUAG---------GACCAGCcGCUGG--CUG- -5'
31261 5' -56.2 NC_006560.1 + 32728 0.66 0.91075
Target:  5'- --cCGGGGUCCgucgGGggGGCGGggcCCGGCg -3'
miRNA:   3'- gauGCUCUAGGa---CCagCCGCU---GGCUG- -5'
31261 5' -56.2 NC_006560.1 + 3933 0.66 0.91075
Target:  5'- -cGCGGGGgcggcgCCgcGGUCGGCGGCgagGGCg -3'
miRNA:   3'- gaUGCUCUa-----GGa-CCAGCCGCUGg--CUG- -5'
31261 5' -56.2 NC_006560.1 + 95235 0.66 0.91075
Target:  5'- -gGCGAGGUgCUGc-CGGCGACCu-- -3'
miRNA:   3'- gaUGCUCUAgGACcaGCCGCUGGcug -5'
31261 5' -56.2 NC_006560.1 + 52231 0.66 0.91075
Target:  5'- -gGCGAGcugCCUGGcccCGGCcGGCgCGGCg -3'
miRNA:   3'- gaUGCUCua-GGACCa--GCCG-CUG-GCUG- -5'
31261 5' -56.2 NC_006560.1 + 124729 0.66 0.904688
Target:  5'- gCUGCuGuuccGAUaCUGcGUCGGCGcACCGACg -3'
miRNA:   3'- -GAUG-Cu---CUAgGAC-CAGCCGC-UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 123774 0.66 0.904688
Target:  5'- -cACGAGGcgcUgCUGGcgUCGGUGACCGuGCc -3'
miRNA:   3'- gaUGCUCU---AgGACC--AGCCGCUGGC-UG- -5'
31261 5' -56.2 NC_006560.1 + 6293 0.66 0.904688
Target:  5'- uUGCGuaauccaacGAUCCUGcGUUgcuaGGCGACCGGg -3'
miRNA:   3'- gAUGCu--------CUAGGAC-CAG----CCGCUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 76701 0.66 0.904688
Target:  5'- -cGCGGGGgcgCCUGGaagucgcCGGCGGCCcuggaGGCg -3'
miRNA:   3'- gaUGCUCUa--GGACCa------GCCGCUGG-----CUG- -5'
31261 5' -56.2 NC_006560.1 + 148514 0.66 0.904688
Target:  5'- -gACGGcGGUCCga--CGGCGACUGGCu -3'
miRNA:   3'- gaUGCU-CUAGGaccaGCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 132566 0.66 0.904069
Target:  5'- -cGCGgccgucuGGGUCUUGGg-GGCGuCCGACg -3'
miRNA:   3'- gaUGC-------UCUAGGACCagCCGCuGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 133313 0.66 0.898397
Target:  5'- aUGCGcagcAGcgCCUGGuggcugauggccUCGGCGacGCCGACc -3'
miRNA:   3'- gAUGC----UCuaGGACC------------AGCCGC--UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 85693 0.66 0.898397
Target:  5'- --uCGAGGgcaCCUGGUCG-CGGCgGGCc -3'
miRNA:   3'- gauGCUCUa--GGACCAGCcGCUGgCUG- -5'
31261 5' -56.2 NC_006560.1 + 9131 0.66 0.898397
Target:  5'- uUGCGAGggCCcgcaGGucuUCGGCGacGCCGAUg -3'
miRNA:   3'- gAUGCUCuaGGa---CC---AGCCGC--UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 4862 0.66 0.898397
Target:  5'- -gGCGAGGUUCgcgucgacGGcggCGGCGgcGCCGGCg -3'
miRNA:   3'- gaUGCUCUAGGa-------CCa--GCCGC--UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 115447 0.66 0.891878
Target:  5'- -cGCGAGAUCgUGGcgCGGCuGgUGGCg -3'
miRNA:   3'- gaUGCUCUAGgACCa-GCCGcUgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.