miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31269 5' -64.7 NC_006560.1 + 60977 0.66 0.526898
Target:  5'- gGCCGuggacuGGCUCCCCga-GCCgaugaccgUCACCGa -3'
miRNA:   3'- aCGGC------CCGAGGGGaucCGGa-------GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 35124 0.66 0.526898
Target:  5'- gGCCGGGgUCCgCUcgggagAGGCCggCgGCCc -3'
miRNA:   3'- aCGGCCCgAGGgGA------UCCGGa-GgUGGc -5'
31269 5' -64.7 NC_006560.1 + 105981 0.66 0.526898
Target:  5'- aGCCucucGuGCUCCC--GGGCCcgCCGCCGg -3'
miRNA:   3'- aCGGc---C-CGAGGGgaUCCGGa-GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 132613 0.66 0.526898
Target:  5'- gGCCGGcGCggaagUCCUcGGCCgcccagCCGCCGg -3'
miRNA:   3'- aCGGCC-CGag---GGGAuCCGGa-----GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 48730 0.66 0.526898
Target:  5'- cGcCCGGGaggUUCUCUGGGCCgUCUACgCGg -3'
miRNA:   3'- aC-GGCCCg--AGGGGAUCCGG-AGGUG-GC- -5'
31269 5' -64.7 NC_006560.1 + 42864 0.66 0.526898
Target:  5'- cGUgGGGCgucagcagCCgCUccGCCUCCGCCa -3'
miRNA:   3'- aCGgCCCGa-------GGgGAucCGGAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 39015 0.66 0.525031
Target:  5'- gGCCcagGGGCUgUCCgGGGCCgcgaacugcgucCCGCCGa -3'
miRNA:   3'- aCGG---CCCGAgGGGaUCCGGa-----------GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 131948 0.66 0.517587
Target:  5'- cGaCGGGCUggUCCUggAGGCCUUCGCgCGg -3'
miRNA:   3'- aCgGCCCGA--GGGGa-UCCGGAGGUG-GC- -5'
31269 5' -64.7 NC_006560.1 + 119501 0.66 0.517587
Target:  5'- cUGCCGGGaggugCCUCcGGGCCgcggggCCGCgCGc -3'
miRNA:   3'- -ACGGCCCga---GGGGaUCCGGa-----GGUG-GC- -5'
31269 5' -64.7 NC_006560.1 + 43682 0.66 0.517587
Target:  5'- gGCCGcGCUgCCCgagcgGGGCgCgcgCCACCa -3'
miRNA:   3'- aCGGCcCGAgGGGa----UCCG-Ga--GGUGGc -5'
31269 5' -64.7 NC_006560.1 + 52638 0.66 0.517587
Target:  5'- cGCCGGGCgagggcgaCCCCa--GCCUCCAg-- -3'
miRNA:   3'- aCGGCCCGa-------GGGGaucCGGAGGUggc -5'
31269 5' -64.7 NC_006560.1 + 100116 0.66 0.517587
Target:  5'- cUGCCGGcggcGCUCggCCacgAGG-CUCCACCGg -3'
miRNA:   3'- -ACGGCC----CGAG--GGga-UCCgGAGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 1294 0.66 0.508343
Target:  5'- cGCCGGGCcgCCC--GGG-UUCCGCCc -3'
miRNA:   3'- aCGGCCCGa-GGGgaUCCgGAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 81294 0.66 0.508343
Target:  5'- gGCCGGGCcgCCgCCUuuuaucgggcgAGGCCgaCCAgCCa -3'
miRNA:   3'- aCGGCCCGa-GG-GGA-----------UCCGGa-GGU-GGc -5'
31269 5' -64.7 NC_006560.1 + 146785 0.66 0.508343
Target:  5'- aGUCGGGgUCUgggUCUGGGUCUgCGCCu -3'
miRNA:   3'- aCGGCCCgAGG---GGAUCCGGAgGUGGc -5'
31269 5' -64.7 NC_006560.1 + 126590 0.66 0.508343
Target:  5'- cGuCUGGGCgCCCggccaCUGcGCCUCCGCCa -3'
miRNA:   3'- aC-GGCCCGaGGG-----GAUcCGGAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 95079 0.66 0.508343
Target:  5'- aGCUGGGCggaCgUCgcGGGCCgggCCGCCGc -3'
miRNA:   3'- aCGGCCCGa--GgGGa-UCCGGa--GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 72511 0.66 0.499169
Target:  5'- -cUCGGGUUCCCUaAGcGCCgCCGCCc -3'
miRNA:   3'- acGGCCCGAGGGGaUC-CGGaGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 93347 0.66 0.499169
Target:  5'- gGCCGGaGC-CCCCacgAGacgcGCCUCCcguGCCGu -3'
miRNA:   3'- aCGGCC-CGaGGGGa--UC----CGGAGG---UGGC- -5'
31269 5' -64.7 NC_006560.1 + 134458 0.66 0.499169
Target:  5'- gGCgCGGGCggCCCCcgcGGGCCcgcggUCC-CCGu -3'
miRNA:   3'- aCG-GCCCGa-GGGGa--UCCGG-----AGGuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.