miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3128 3' -66 NC_001493.1 + 75874 0.66 0.442887
Target:  5'- cCCCCUCUC-CUCGGgaUGGUCUCGGGu -3'
miRNA:   3'- aGGGGAGGGcGGGCC--ACCGGGGCUUu -5'
3128 3' -66 NC_001493.1 + 134122 0.66 0.442887
Target:  5'- uUCCUCagggCUCGCCCcGUGGCCgUGGAc -3'
miRNA:   3'- -AGGGGa---GGGCGGGcCACCGGgGCUUu -5'
3128 3' -66 NC_001493.1 + 18567 0.66 0.442887
Target:  5'- uUCCUCagggCUCGCCCcGUGGCCgUGGAc -3'
miRNA:   3'- -AGGGGa---GGGCGGGcCACCGGgGCUUu -5'
3128 3' -66 NC_001493.1 + 121034 0.66 0.442887
Target:  5'- cUCCCugguCUCCUcCCCGGUgaacccGGCUCCGAu- -3'
miRNA:   3'- -AGGG----GAGGGcGGGCCA------CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 5480 0.66 0.442887
Target:  5'- cUCCCugguCUCCUcCCCGGUgaacccGGCUCCGAu- -3'
miRNA:   3'- -AGGG----GAGGGcGGGCCA------CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 19013 0.66 0.425865
Target:  5'- cCCaCCUCCCGCgCCGcgaGCCCgGGAAa -3'
miRNA:   3'- aGG-GGAGGGCG-GGCcacCGGGgCUUU- -5'
3128 3' -66 NC_001493.1 + 130609 0.66 0.425865
Target:  5'- aCCgCUCCC-UCCGG-GGCCCCu--- -3'
miRNA:   3'- aGGgGAGGGcGGGCCaCCGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 15055 0.66 0.425865
Target:  5'- aCCgCUCCC-UCCGG-GGCCCCu--- -3'
miRNA:   3'- aGGgGAGGGcGGGCCaCCGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 37350 0.66 0.417501
Target:  5'- uUCaCCCgcgacaCCGUCuCGGaUGGCCUCGAGAa -3'
miRNA:   3'- -AG-GGGag----GGCGG-GCC-ACCGGGGCUUU- -5'
3128 3' -66 NC_001493.1 + 125288 0.66 0.417501
Target:  5'- aUCCCgUCCCGUcggcgagcaCCGcGUGGUaggccgugagCCCGAGAg -3'
miRNA:   3'- -AGGGgAGGGCG---------GGC-CACCG----------GGGCUUU- -5'
3128 3' -66 NC_001493.1 + 23364 0.66 0.409238
Target:  5'- cUCCCUCuuGaugucuUCGGUGGCCUCGGc- -3'
miRNA:   3'- aGGGGAGggCg-----GGCCACCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 51363 0.66 0.409238
Target:  5'- cCCCCUCCCGUggCGGUccaGGUCCCc--- -3'
miRNA:   3'- aGGGGAGGGCGg-GCCA---CCGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 133761 0.66 0.401077
Target:  5'- cCCCCgaCCGCCCGGgcguGCCCaUGGAGg -3'
miRNA:   3'- aGGGGagGGCGGGCCac--CGGG-GCUUU- -5'
3128 3' -66 NC_001493.1 + 87537 0.66 0.401077
Target:  5'- aCCCCUgaC-CCCGGUGGUgCCGGu- -3'
miRNA:   3'- aGGGGAggGcGGGCCACCGgGGCUuu -5'
3128 3' -66 NC_001493.1 + 17597 0.66 0.401077
Target:  5'- aUCCCgggCaCGCCCGcGUugcGGCCCCGAc- -3'
miRNA:   3'- aGGGGa--GgGCGGGC-CA---CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 133151 0.66 0.401077
Target:  5'- aUCCCgggCaCGCCCGcGUugcGGCCCCGAc- -3'
miRNA:   3'- aGGGGa--GgGCGGGC-CA---CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 18207 0.66 0.401077
Target:  5'- cCCCCgaCCGCCCGGgcguGCCCaUGGAGg -3'
miRNA:   3'- aGGGGagGGCGGGCCac--CGGG-GCUUU- -5'
3128 3' -66 NC_001493.1 + 13547 0.66 0.393022
Target:  5'- cCCCCUuacCCCGgaCCgCGGUGGagaggCCCGAGAc -3'
miRNA:   3'- aGGGGA---GGGC--GG-GCCACCg----GGGCUUU- -5'
3128 3' -66 NC_001493.1 + 129101 0.66 0.393022
Target:  5'- cCCCCUuacCCCGgaCCgCGGUGGagaggCCCGAGAc -3'
miRNA:   3'- aGGGGA---GGGC--GG-GCCACCg----GGGCUUU- -5'
3128 3' -66 NC_001493.1 + 119384 0.67 0.385071
Target:  5'- cCCCCUUCCGUUCGGgauCCCCGuuGa -3'
miRNA:   3'- aGGGGAGGGCGGGCCaccGGGGCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.