miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3129 5' -64.8 NC_001493.1 + 29137 0.66 0.534346
Target:  5'- --uUGG-UCCGGGCcguGCCCCCgCGuUCGg -3'
miRNA:   3'- gacACCuGGGCCCG---UGGGGGgGC-AGC- -5'
3129 5' -64.8 NC_001493.1 + 121052 0.66 0.533413
Target:  5'- -gGUGaACCCGGcuccgauGUACUCUCCCGUCu -3'
miRNA:   3'- gaCACcUGGGCC-------CGUGGGGGGGCAGc -5'
3129 5' -64.8 NC_001493.1 + 5498 0.66 0.533413
Target:  5'- -gGUGaACCCGGcuccgauGUACUCUCCCGUCu -3'
miRNA:   3'- gaCACcUGGGCC-------CGUGGGGGGGCAGc -5'
3129 5' -64.8 NC_001493.1 + 94856 0.66 0.525044
Target:  5'- -cGUGGcACCCaccGGGacguaCCCCCgGUCGg -3'
miRNA:   3'- gaCACC-UGGG---CCCgug--GGGGGgCAGC- -5'
3129 5' -64.8 NC_001493.1 + 87848 0.66 0.525044
Target:  5'- ---cGGAccuacCCCGGGacCugCCCCCCG-CGg -3'
miRNA:   3'- gacaCCU-----GGGCCC--GugGGGGGGCaGC- -5'
3129 5' -64.8 NC_001493.1 + 87902 0.66 0.525044
Target:  5'- ---cGGAccuacCCCGGGacCugCCCCCCG-CGg -3'
miRNA:   3'- gacaCCU-----GGGCCC--GugGGGGGGCaGC- -5'
3129 5' -64.8 NC_001493.1 + 59848 0.66 0.515805
Target:  5'- -aGUGGugUCGcaaaaGGCgGCCCCgUCGUCGa -3'
miRNA:   3'- gaCACCugGGC-----CCG-UGGGGgGGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 128442 0.66 0.506632
Target:  5'- -gGUGGAgagcgcccgauCCCGGuGagGCUCCCCCGUgGg -3'
miRNA:   3'- gaCACCU-----------GGGCC-Cg-UGGGGGGGCAgC- -5'
3129 5' -64.8 NC_001493.1 + 3114 0.66 0.506632
Target:  5'- ---cGGACUCGGGaagaACCucaCCCCCGcCGa -3'
miRNA:   3'- gacaCCUGGGCCCg---UGG---GGGGGCaGC- -5'
3129 5' -64.8 NC_001493.1 + 88635 0.66 0.506632
Target:  5'- -cGUGGGCCCGauCACCCCgUCCGcCu -3'
miRNA:   3'- gaCACCUGGGCccGUGGGG-GGGCaGc -5'
3129 5' -64.8 NC_001493.1 + 118668 0.66 0.506632
Target:  5'- ---cGGACUCGGGaagaACCucaCCCCCGcCGa -3'
miRNA:   3'- gacaCCUGGGCCCg---UGG---GGGGGCaGC- -5'
3129 5' -64.8 NC_001493.1 + 12888 0.66 0.506632
Target:  5'- -gGUGGAgagcgcccgauCCCGGuGagGCUCCCCCGUgGg -3'
miRNA:   3'- gaCACCU-----------GGGCC-Cg-UGGGGGGGCAgC- -5'
3129 5' -64.8 NC_001493.1 + 62969 0.67 0.470681
Target:  5'- ---cGGugCCGGuCGCCCCCgugggcuucaCCGUCGc -3'
miRNA:   3'- gacaCCugGGCCcGUGGGGG----------GGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 62808 0.67 0.470681
Target:  5'- ---cGGugCCGGuCGCCCCCgugggcuucgCCGUCGc -3'
miRNA:   3'- gacaCCugGGCCcGUGGGGG----------GGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 62724 0.67 0.453196
Target:  5'- ---cGGugCCGGuCGCCCCCgugggcuucgCCGUCGu -3'
miRNA:   3'- gacaCCugGGCCcGUGGGGG----------GGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 133047 0.68 0.411101
Target:  5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3'
miRNA:   3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5'
3129 5' -64.8 NC_001493.1 + 17493 0.68 0.411101
Target:  5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3'
miRNA:   3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5'
3129 5' -64.8 NC_001493.1 + 133141 0.68 0.410284
Target:  5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3'
miRNA:   3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 17587 0.68 0.410284
Target:  5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3'
miRNA:   3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 48113 0.68 0.402977
Target:  5'- -cGUGGAgggcCUCGGcGCACCCgaCCCCGUa- -3'
miRNA:   3'- gaCACCU----GGGCC-CGUGGG--GGGGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.