miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 3' -62.3 NC_001493.1 + 8655 1.11 0.000582
Target:  5'- gACGAGGGGUGCGGACACGGACGGGCCa -3'
miRNA:   3'- -UGCUCCCCACGCCUGUGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 124209 1.11 0.000582
Target:  5'- gACGAGGGGUGCGGACACGGACGGGCCa -3'
miRNA:   3'- -UGCUCCCCACGCCUGUGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 110566 0.75 0.201192
Target:  5'- gGCGGGGGGUGgcgacugGGACACacgaugcccgGGAUGGGCUu -3'
miRNA:   3'- -UGCUCCCCACg------CCUGUG----------CCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 113683 0.73 0.254016
Target:  5'- aACGAGGGGcaccUGCGGuuACuGugGGGCa -3'
miRNA:   3'- -UGCUCCCC----ACGCCugUGcCugCCCGg -5'
3130 3' -62.3 NC_001493.1 + 14898 0.73 0.26586
Target:  5'- cGCGAGGGGccccggagggaGCGG-UGCGGguGCGGGCCc -3'
miRNA:   3'- -UGCUCCCCa----------CGCCuGUGCC--UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 130452 0.73 0.26586
Target:  5'- cGCGAGGGGccccggagggaGCGG-UGCGGguGCGGGCCc -3'
miRNA:   3'- -UGCUCCCCa----------CGCCuGUGCC--UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 92990 0.73 0.284459
Target:  5'- -aGAGGGGUucGgGGACGCcgucgGGugGGGCg -3'
miRNA:   3'- ugCUCCCCA--CgCCUGUG-----CCugCCCGg -5'
3130 3' -62.3 NC_001493.1 + 18807 0.71 0.331811
Target:  5'- aGCGGGGGGUGagacuCGGGuCGCucGACGcGGCCg -3'
miRNA:   3'- -UGCUCCCCAC-----GCCU-GUGc-CUGC-CCGG- -5'
3130 3' -62.3 NC_001493.1 + 30227 0.71 0.346363
Target:  5'- cCGAGGGGcucauuccccUGU--ACGCGGAgCGGGCCg -3'
miRNA:   3'- uGCUCCCC----------ACGccUGUGCCU-GCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 36177 0.71 0.346363
Target:  5'- aGCGAGGGGUuCGGGaACGGGCuGuGGCa -3'
miRNA:   3'- -UGCUCCCCAcGCCUgUGCCUG-C-CCGg -5'
3130 3' -62.3 NC_001493.1 + 132983 0.71 0.356819
Target:  5'- cGCGccaGGGUGCGGGCACccccucugaggucgaGGgucccACGGGCCu -3'
miRNA:   3'- -UGCuc-CCCACGCCUGUG---------------CC-----UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 17429 0.71 0.356819
Target:  5'- cGCGccaGGGUGCGGGCACccccucugaggucgaGGgucccACGGGCCu -3'
miRNA:   3'- -UGCuc-CCCACGCCUGUG---------------CC-----UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 27866 0.7 0.387895
Target:  5'- aGCGAGGaGGagaGCgaagagagcgaGGACgaagacccaccgucuGCGGGCGGGCCa -3'
miRNA:   3'- -UGCUCC-CCa--CG-----------CCUG---------------UGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 70693 0.69 0.442896
Target:  5'- cACGccaucGGGUGUGauCACGGACGGGUCu -3'
miRNA:   3'- -UGCuc---CCCACGCcuGUGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 36229 0.69 0.442896
Target:  5'- uGCGcGGGGGUgcucagugggGCGGguuGCGCGGACgauuGGGUCa -3'
miRNA:   3'- -UGC-UCCCCA----------CGCC---UGUGCCUG----CCCGG- -5'
3130 3' -62.3 NC_001493.1 + 62611 0.69 0.442896
Target:  5'- cACGGGcacGGGcaCGGGCACGGccACGGGCa -3'
miRNA:   3'- -UGCUC---CCCacGCCUGUGCC--UGCCCGg -5'
3130 3' -62.3 NC_001493.1 + 57707 0.69 0.469309
Target:  5'- cACGAGGccgugaccGUGCGGAUGCGGGCacauGCCa -3'
miRNA:   3'- -UGCUCCc-------CACGCCUGUGCCUGcc--CGG- -5'
3130 3' -62.3 NC_001493.1 + 61512 0.69 0.478291
Target:  5'- aGCGGGGGaUGgacUGGGuCGCGGGacucCGGGCCa -3'
miRNA:   3'- -UGCUCCCcAC---GCCU-GUGCCU----GCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 119357 0.68 0.491007
Target:  5'- uCGAGGugauGUGCGGGuccauccuccucCccgggcaugacgagaGCGGACGGGCCa -3'
miRNA:   3'- uGCUCCc---CACGCCU------------G---------------UGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 3803 0.68 0.491007
Target:  5'- uCGAGGugauGUGCGGGuccauccuccucCccgggcaugacgagaGCGGACGGGCCa -3'
miRNA:   3'- uGCUCCc---CACGCCU------------G---------------UGCCUGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.