Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3130 | 3' | -62.3 | NC_001493.1 | + | 3134 | 0.66 | 0.601197 |
Target: 5'- cGCGGGuucGGUGCGGACcuCGGAcuCGGGa- -3' miRNA: 3'- -UGCUCc--CCACGCCUGu-GCCU--GCCCgg -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 3229 | 0.68 | 0.533816 |
Target: 5'- cCGAGGuGGagucagagGCGGACGaggaccCGGACGaGGUCg -3' miRNA: 3'- uGCUCC-CCa-------CGCCUGU------GCCUGC-CCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 3803 | 0.68 | 0.491007 |
Target: 5'- uCGAGGugauGUGCGGGuccauccuccucCccgggcaugacgagaGCGGACGGGCCa -3' miRNA: 3'- uGCUCCc---CACGCCU------------G---------------UGCCUGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 8056 | 0.68 | 0.533816 |
Target: 5'- cGCucGGGGUGCGGGCuCGGucucgcucaGGGUg -3' miRNA: 3'- -UGcuCCCCACGCCUGuGCCug-------CCCGg -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 8325 | 0.67 | 0.581753 |
Target: 5'- cCGGGGGGU-CGGAgGCucGGAacaGGcGCCg -3' miRNA: 3'- uGCUCCCCAcGCCUgUG--CCUg--CC-CGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 8655 | 1.11 | 0.000582 |
Target: 5'- gACGAGGGGUGCGGACACGGACGGGCCa -3' miRNA: 3'- -UGCUCCCCACGCCUGUGCCUGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 9364 | 0.66 | 0.649082 |
Target: 5'- uCGGGGGGUaGCuccaGGuACACgaagacgGGACGGGUg -3' miRNA: 3'- uGCUCCCCA-CG----CC-UGUG-------CCUGCCCGg -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 14898 | 0.73 | 0.26586 |
Target: 5'- cGCGAGGGGccccggagggaGCGG-UGCGGguGCGGGCCc -3' miRNA: 3'- -UGCUCCCCa----------CGCCuGUGCC--UGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 17429 | 0.71 | 0.356819 |
Target: 5'- cGCGccaGGGUGCGGGCACccccucugaggucgaGGgucccACGGGCCu -3' miRNA: 3'- -UGCuc-CCCACGCCUGUG---------------CC-----UGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 18807 | 0.71 | 0.331811 |
Target: 5'- aGCGGGGGGUGagacuCGGGuCGCucGACGcGGCCg -3' miRNA: 3'- -UGCUCCCCAC-----GCCU-GUGc-CUGC-CCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 21391 | 0.66 | 0.610954 |
Target: 5'- cACcAGGGGcgGCGGcCugaaGGuCGGGCCu -3' miRNA: 3'- -UGcUCCCCa-CGCCuGug--CCuGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 27610 | 0.68 | 0.496504 |
Target: 5'- uCGAGGGGacccgcGCGGGCuCGGGaucGGCCc -3' miRNA: 3'- uGCUCCCCa-----CGCCUGuGCCUgc-CCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 27866 | 0.7 | 0.387895 |
Target: 5'- aGCGAGGaGGagaGCgaagagagcgaGGACgaagacccaccgucuGCGGGCGGGCCa -3' miRNA: 3'- -UGCUCC-CCa--CG-----------CCUG---------------UGCCUGCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 30227 | 0.71 | 0.346363 |
Target: 5'- cCGAGGGGcucauuccccUGU--ACGCGGAgCGGGCCg -3' miRNA: 3'- uGCUCCCC----------ACGccUGUGCCU-GCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 30481 | 0.66 | 0.610954 |
Target: 5'- uCGGGGGGauCGGgu-CGGACGGGgCg -3' miRNA: 3'- uGCUCCCCacGCCuguGCCUGCCCgG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 32566 | 0.66 | 0.650059 |
Target: 5'- gACGAagaaGGGGUcuCGGGC-CGGACcGGUCg -3' miRNA: 3'- -UGCU----CCCCAc-GCCUGuGCCUGcCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 36177 | 0.71 | 0.346363 |
Target: 5'- aGCGAGGGGUuCGGGaACGGGCuGuGGCa -3' miRNA: 3'- -UGCUCCCCAcGCCUgUGCCUG-C-CCGg -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 36229 | 0.69 | 0.442896 |
Target: 5'- uGCGcGGGGGUgcucagugggGCGGguuGCGCGGACgauuGGGUCa -3' miRNA: 3'- -UGC-UCCCCA----------CGCC---UGUGCCUG----CCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 43704 | 0.66 | 0.610954 |
Target: 5'- cGCGAGGGcGguguuUGUGGGagagacCAUGGugGGGUUg -3' miRNA: 3'- -UGCUCCC-C-----ACGCCU------GUGCCugCCCGG- -5' |
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3130 | 3' | -62.3 | NC_001493.1 | + | 45876 | 0.68 | 0.496504 |
Target: 5'- gGCGAGauGUGCGGGCuGCGcGAgGcGGCCa -3' miRNA: 3'- -UGCUCccCACGCCUG-UGC-CUgC-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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