miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 3' -62.3 NC_001493.1 + 32566 0.66 0.650059
Target:  5'- gACGAagaaGGGGUcuCGGGC-CGGACcGGUCg -3'
miRNA:   3'- -UGCU----CCCCAc-GCCUGuGCCUGcCCGG- -5'
3130 3' -62.3 NC_001493.1 + 27610 0.68 0.496504
Target:  5'- uCGAGGGGacccgcGCGGGCuCGGGaucGGCCc -3'
miRNA:   3'- uGCUCCCCa-----CGCCUGuGCCUgc-CCGG- -5'
3130 3' -62.3 NC_001493.1 + 45876 0.68 0.496504
Target:  5'- gGCGAGauGUGCGGGCuGCGcGAgGcGGCCa -3'
miRNA:   3'- -UGCUCccCACGCCUG-UGC-CUgC-CCGG- -5'
3130 3' -62.3 NC_001493.1 + 107802 0.68 0.515023
Target:  5'- gAUGAGGcugaccGCGGACACGGG-GGGUCc -3'
miRNA:   3'- -UGCUCCcca---CGCCUGUGCCUgCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 8056 0.68 0.533816
Target:  5'- cGCucGGGGUGCGGGCuCGGucucgcucaGGGUg -3'
miRNA:   3'- -UGcuCCCCACGCCUGuGCCug-------CCCGg -5'
3130 3' -62.3 NC_001493.1 + 123611 0.68 0.533816
Target:  5'- cGCucGGGGUGCGGGCuCGGucucgcucaGGGUg -3'
miRNA:   3'- -UGcuCCCCACGCCUGuGCCug-------CCCGg -5'
3130 3' -62.3 NC_001493.1 + 89979 0.67 0.591461
Target:  5'- ---cGGGGU-CGcGCACGGACcGGCCg -3'
miRNA:   3'- ugcuCCCCAcGCcUGUGCCUGcCCGG- -5'
3130 3' -62.3 NC_001493.1 + 43704 0.66 0.610954
Target:  5'- cGCGAGGGcGguguuUGUGGGagagacCAUGGugGGGUUg -3'
miRNA:   3'- -UGCUCCC-C-----ACGCCU------GUGCCugCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 65992 0.66 0.620725
Target:  5'- -aGGGGGGUGgGGcguucguCGgGGACgugggguaggaGGGCCu -3'
miRNA:   3'- ugCUCCCCACgCCu------GUgCCUG-----------CCCGG- -5'
3130 3' -62.3 NC_001493.1 + 119357 0.68 0.491007
Target:  5'- uCGAGGugauGUGCGGGuccauccuccucCccgggcaugacgagaGCGGACGGGCCa -3'
miRNA:   3'- uGCUCCc---CACGCCU------------G---------------UGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 3803 0.68 0.491007
Target:  5'- uCGAGGugauGUGCGGGuccauccuccucCccgggcaugacgagaGCGGACGGGCCa -3'
miRNA:   3'- uGCUCCc---CACGCCU------------G---------------UGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 70693 0.69 0.442896
Target:  5'- cACGccaucGGGUGUGauCACGGACGGGUCu -3'
miRNA:   3'- -UGCuc---CCCACGCcuGUGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 124209 1.11 0.000582
Target:  5'- gACGAGGGGUGCGGACACGGACGGGCCa -3'
miRNA:   3'- -UGCUCCCCACGCCUGUGCCUGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 113683 0.73 0.254016
Target:  5'- aACGAGGGGcaccUGCGGuuACuGugGGGCa -3'
miRNA:   3'- -UGCUCCCC----ACGCCugUGcCugCCCGg -5'
3130 3' -62.3 NC_001493.1 + 14898 0.73 0.26586
Target:  5'- cGCGAGGGGccccggagggaGCGG-UGCGGguGCGGGCCc -3'
miRNA:   3'- -UGCUCCCCa----------CGCCuGUGCC--UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 130452 0.73 0.26586
Target:  5'- cGCGAGGGGccccggagggaGCGG-UGCGGguGCGGGCCc -3'
miRNA:   3'- -UGCUCCCCa----------CGCCuGUGCC--UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 36177 0.71 0.346363
Target:  5'- aGCGAGGGGUuCGGGaACGGGCuGuGGCa -3'
miRNA:   3'- -UGCUCCCCAcGCCUgUGCCUG-C-CCGg -5'
3130 3' -62.3 NC_001493.1 + 17429 0.71 0.356819
Target:  5'- cGCGccaGGGUGCGGGCACccccucugaggucgaGGgucccACGGGCCu -3'
miRNA:   3'- -UGCuc-CCCACGCCUGUG---------------CC-----UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 132983 0.71 0.356819
Target:  5'- cGCGccaGGGUGCGGGCACccccucugaggucgaGGgucccACGGGCCu -3'
miRNA:   3'- -UGCuc-CCCACGCCUGUG---------------CC-----UGCCCGG- -5'
3130 3' -62.3 NC_001493.1 + 36229 0.69 0.442896
Target:  5'- uGCGcGGGGGUgcucagugggGCGGguuGCGCGGACgauuGGGUCa -3'
miRNA:   3'- -UGC-UCCCCA----------CGCC---UGUGCCUG----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.