miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 3' -54.1 NC_006623.1 + 300 1.13 0.002217
Target:  5'- cAGCGCGAGCGCCAUUAAAAGCGCGGCa -3'
miRNA:   3'- -UCGCGCUCGCGGUAAUUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 138811 0.77 0.399895
Target:  5'- uGGCGCG-GCGCCGUUGAcggGAGaaugacgcccucuaGCGGCu -3'
miRNA:   3'- -UCGCGCuCGCGGUAAUU---UUCg-------------CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 122800 0.77 0.399895
Target:  5'- uGGCGCG-GCGCCGUUGAcggGAGaaugacgcccucuaGCGGCu -3'
miRNA:   3'- -UCGCGCuCGCGGUAAUU---UUCg-------------CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 144539 0.73 0.629469
Target:  5'- cGUGgGAgcGCGCCAUgccguacuGCGCGGCu -3'
miRNA:   3'- uCGCgCU--CGCGGUAauuuu---CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 117073 0.73 0.629469
Target:  5'- cGUGgGAgcGCGCCAUgccguacuGCGCGGCu -3'
miRNA:   3'- uCGCgCU--CGCGGUAauuuu---CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 128317 0.72 0.683647
Target:  5'- gGGCGCaGGCGCCGUUucc-GCGCGcCg -3'
miRNA:   3'- -UCGCGcUCGCGGUAAuuuuCGCGCcG- -5'
31351 3' -54.1 NC_006623.1 + 108765 0.72 0.704235
Target:  5'- cGUGCGGGCGgUGgacuAGAGCGgGGCu -3'
miRNA:   3'- uCGCGCUCGCgGUaau-UUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 60766 0.71 0.724569
Target:  5'- -aUGCGGGUGCCAUUGAcuauAGCauauCGGCa -3'
miRNA:   3'- ucGCGCUCGCGGUAAUUu---UCGc---GCCG- -5'
31351 3' -54.1 NC_006623.1 + 115064 0.71 0.724569
Target:  5'- -uCGUGAgcGCGCCGgaggUGGAaagcGGCGCGGCc -3'
miRNA:   3'- ucGCGCU--CGCGGUa---AUUU----UCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 146548 0.71 0.724569
Target:  5'- -uCGUGAgcGCGCCGgaggUGGAaagcGGCGCGGCc -3'
miRNA:   3'- ucGCGCU--CGCGGUa---AUUU----UCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 101589 0.7 0.764163
Target:  5'- uGUGCGAGCuGCCGUUAAuacAAGUGuUGGa -3'
miRNA:   3'- uCGCGCUCG-CGGUAAUU---UUCGC-GCCg -5'
31351 3' -54.1 NC_006623.1 + 122052 0.7 0.773781
Target:  5'- uGCGcCGGGCGUgAagggGGGGGgGCGGCg -3'
miRNA:   3'- uCGC-GCUCGCGgUaa--UUUUCgCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 139560 0.7 0.773781
Target:  5'- uGCGcCGGGCGUgAagggGGGGGgGCGGCg -3'
miRNA:   3'- uCGC-GCUCGCGgUaa--UUUUCgCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 124187 0.7 0.783266
Target:  5'- gAGCGuCGccgcuaacgucGGCGCCGcgGGGAGCGgGGUu -3'
miRNA:   3'- -UCGC-GC-----------UCGCGGUaaUUUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 21929 0.7 0.783266
Target:  5'- aGGCGauggguuugaaGAGCGUCuccgccuAAAGCGCGGUg -3'
miRNA:   3'- -UCGCg----------CUCGCGGuaau---UUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 121521 0.7 0.801803
Target:  5'- cGCGUccGuGCGUUAUUGcgguGCGCGGCa -3'
miRNA:   3'- uCGCG--CuCGCGGUAAUuuu-CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 140091 0.7 0.801803
Target:  5'- cGCGUccGuGCGUUAUUGcgguGCGCGGCa -3'
miRNA:   3'- uCGCG--CuCGCGGUAAUuuu-CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 511 0.69 0.819699
Target:  5'- aAGCG-GAGCGagGUaGGGAGUGUGGCu -3'
miRNA:   3'- -UCGCgCUCGCggUAaUUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 137787 0.69 0.827525
Target:  5'- cGCGCGGGCgGCCuguacgaucacCGCGGCc -3'
miRNA:   3'- uCGCGCUCG-CGGuaauuuuc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 123824 0.69 0.827525
Target:  5'- cGCGCGGGCgGCCuguacgaucacCGCGGCc -3'
miRNA:   3'- uCGCGCUCG-CGGuaauuuuc---GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.