miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 3' -54.1 NC_006623.1 + 138652 0.67 0.927453
Target:  5'- cGGCGCc-GCGCCAgcgccAGCGCGa- -3'
miRNA:   3'- -UCGCGcuCGCGGUaauuuUCGCGCcg -5'
31351 3' -54.1 NC_006623.1 + 131557 0.69 0.852493
Target:  5'- gGGCGC-AGaGCCGgaAAuuacucagaccccGAGCGCGGCa -3'
miRNA:   3'- -UCGCGcUCgCGGUaaUU-------------UUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 60061 0.69 0.853294
Target:  5'- aAGCGCGGucuucuagcGCGUCA----AGGCGaCGGCu -3'
miRNA:   3'- -UCGCGCU---------CGCGGUaauuUUCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 138736 0.68 0.861189
Target:  5'- cGGCGCGcaaGGCgGCCAggUAuucGCGaCGGCg -3'
miRNA:   3'- -UCGCGC---UCG-CGGUa-AUuuuCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 125127 0.68 0.866587
Target:  5'- aGGCGuCGAGCGCCucgccgaacuuGUUAgugugacaaugacaGAAcGCGCGGa -3'
miRNA:   3'- -UCGC-GCUCGCGG-----------UAAU--------------UUU-CGCGCCg -5'
31351 3' -54.1 NC_006623.1 + 137984 0.68 0.868868
Target:  5'- cAGCGCGccGGcCGCCG---GAcuCGCGGCg -3'
miRNA:   3'- -UCGCGC--UC-GCGGUaauUUucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 117 0.68 0.876325
Target:  5'- uGGCGCGuuuGGC-CCccUGccAGCGCGGCc -3'
miRNA:   3'- -UCGCGC---UCGcGGuaAUuuUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 122303 0.67 0.916138
Target:  5'- cGCgGUGGGCGUCGacgGAGAGCGUcGCc -3'
miRNA:   3'- uCG-CGCUCGCGGUaa-UUUUCGCGcCG- -5'
31351 3' -54.1 NC_006623.1 + 131223 0.67 0.92192
Target:  5'- -cCGCucGCGCUcc---GAGCGCGGCg -3'
miRNA:   3'- ucGCGcuCGCGGuaauuUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 132318 0.69 0.84519
Target:  5'- cAGCGCGAGaGCaggc-GAGGCGUGGa -3'
miRNA:   3'- -UCGCGCUCgCGguaauUUUCGCGCCg -5'
31351 3' -54.1 NC_006623.1 + 123824 0.69 0.827525
Target:  5'- cGCGCGGGCgGCCuguacgaucacCGCGGCc -3'
miRNA:   3'- uCGCGCUCG-CGGuaauuuuc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 121521 0.7 0.801803
Target:  5'- cGCGUccGuGCGUUAUUGcgguGCGCGGCa -3'
miRNA:   3'- uCGCG--CuCGCGGUAAUuuu-CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 122800 0.77 0.399895
Target:  5'- uGGCGCG-GCGCCGUUGAcggGAGaaugacgcccucuaGCGGCu -3'
miRNA:   3'- -UCGCGCuCGCGGUAAUU---UUCg-------------CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 144539 0.73 0.629469
Target:  5'- cGUGgGAgcGCGCCAUgccguacuGCGCGGCu -3'
miRNA:   3'- uCGCgCU--CGCGGUAauuuu---CGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 128317 0.72 0.683647
Target:  5'- gGGCGCaGGCGCCGUUucc-GCGCGcCg -3'
miRNA:   3'- -UCGCGcUCGCGGUAAuuuuCGCGCcG- -5'
31351 3' -54.1 NC_006623.1 + 108765 0.72 0.704235
Target:  5'- cGUGCGGGCGgUGgacuAGAGCGgGGCu -3'
miRNA:   3'- uCGCGCUCGCgGUaau-UUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 146548 0.71 0.724569
Target:  5'- -uCGUGAgcGCGCCGgaggUGGAaagcGGCGCGGCc -3'
miRNA:   3'- ucGCGCU--CGCGGUa---AUUU----UCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 139560 0.7 0.773781
Target:  5'- uGCGcCGGGCGUgAagggGGGGGgGCGGCg -3'
miRNA:   3'- uCGC-GCUCGCGgUaa--UUUUCgCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 21929 0.7 0.783266
Target:  5'- aGGCGauggguuugaaGAGCGUCuccgccuAAAGCGCGGUg -3'
miRNA:   3'- -UCGCg----------CUCGCGGuaau---UUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 124187 0.7 0.783266
Target:  5'- gAGCGuCGccgcuaacgucGGCGCCGcgGGGAGCGgGGUu -3'
miRNA:   3'- -UCGC-GC-----------UCGCGGUaaUUUUCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.