miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 3' -54.1 NC_006623.1 + 117 0.68 0.876325
Target:  5'- uGGCGCGuuuGGC-CCccUGccAGCGCGGCc -3'
miRNA:   3'- -UCGCGC---UCGcGGuaAUuuUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 300 1.13 0.002217
Target:  5'- cAGCGCGAGCGCCAUUAAAAGCGCGGCa -3'
miRNA:   3'- -UCGCGCUCGCGGUAAUUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 511 0.69 0.819699
Target:  5'- aAGCG-GAGCGagGUaGGGAGUGUGGCu -3'
miRNA:   3'- -UCGCgCUCGCggUAaUUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 21929 0.7 0.783266
Target:  5'- aGGCGauggguuugaaGAGCGUCuccgccuAAAGCGCGGUg -3'
miRNA:   3'- -UCGCg----------CUCGCGGuaau---UUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 27367 0.69 0.828385
Target:  5'- gGGCGCGAauaGUGCCcgUcAAGGU-CGGCg -3'
miRNA:   3'- -UCGCGCU---CGCGGuaAuUUUCGcGCCG- -5'
31351 3' -54.1 NC_006623.1 + 38515 0.66 0.951393
Target:  5'- aGGCGaGGGUGUCGUUcGAAuccaCGCGGCc -3'
miRNA:   3'- -UCGCgCUCGCGGUAAuUUUc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 40293 0.66 0.942556
Target:  5'- aAGCGCcAG-GCUAUUGGGAGacaucguaGCGGUa -3'
miRNA:   3'- -UCGCGcUCgCGGUAAUUUUCg-------CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 60061 0.69 0.853294
Target:  5'- aAGCGCGGucuucuagcGCGUCA----AGGCGaCGGCu -3'
miRNA:   3'- -UCGCGCU---------CGCGGUaauuUUCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 60766 0.71 0.724569
Target:  5'- -aUGCGGGUGCCAUUGAcuauAGCauauCGGCa -3'
miRNA:   3'- ucGCGCUCGCGGUAAUUu---UCGc---GCCG- -5'
31351 3' -54.1 NC_006623.1 + 62871 0.66 0.942556
Target:  5'- -uUGUGAGUGUCGaacauAGAGCGgGGCu -3'
miRNA:   3'- ucGCGCUCGCGGUaau--UUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 68493 0.66 0.951393
Target:  5'- --gGgGAGCGCCA----AGGCaCGGCa -3'
miRNA:   3'- ucgCgCUCGCGGUaauuUUCGcGCCG- -5'
31351 3' -54.1 NC_006623.1 + 68565 0.69 0.853294
Target:  5'- -uUGCG-GCGCCGUUGcu--CGCGGCu -3'
miRNA:   3'- ucGCGCuCGCGGUAAUuuucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 69871 0.66 0.93777
Target:  5'- gGGUGUuugauugaGAGUGaUCAaUGAugGAGCGCGGCg -3'
miRNA:   3'- -UCGCG--------CUCGC-GGUaAUU--UUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 101589 0.7 0.764163
Target:  5'- uGUGCGAGCuGCCGUUAAuacAAGUGuUGGa -3'
miRNA:   3'- uCGCGCUCG-CGGUAAUU---UUCGC-GCCg -5'
31351 3' -54.1 NC_006623.1 + 101655 0.68 0.876325
Target:  5'- uGGCGgaaGAGCGgCAgcgcAGGGGCaGCGGCc -3'
miRNA:   3'- -UCGCg--CUCGCgGUaa--UUUUCG-CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 105598 0.67 0.927453
Target:  5'- gGGCGCGGaggaacGCGagaaCGgu-GGAGCaGCGGCa -3'
miRNA:   3'- -UCGCGCU------CGCg---GUaauUUUCG-CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 108765 0.72 0.704235
Target:  5'- cGUGCGGGCGgUGgacuAGAGCGgGGCu -3'
miRNA:   3'- uCGCGCUCGCgGUaau-UUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 108981 0.67 0.916138
Target:  5'- uGuCGUGGGUGCgAcgGGucGUGCGGCa -3'
miRNA:   3'- uC-GCGCUCGCGgUaaUUuuCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 115064 0.71 0.724569
Target:  5'- -uCGUGAgcGCGCCGgaggUGGAaagcGGCGCGGCc -3'
miRNA:   3'- ucGCGCU--CGCGGUa---AUUU----UCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 117073 0.73 0.629469
Target:  5'- cGUGgGAgcGCGCCAUgccguacuGCGCGGCu -3'
miRNA:   3'- uCGCgCU--CGCGGUAauuuu---CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.