miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3137 5' -47.2 NC_001493.1 + 15295 1.14 0.009755
Target:  5'- aACCGAAAGAAUCGGCAUAAACGGACCg -3'
miRNA:   3'- -UGGCUUUCUUAGCCGUAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 130849 1.14 0.009755
Target:  5'- aACCGAAAGAAUCGGCAUAAACGGACCg -3'
miRNA:   3'- -UGGCUUUCUUAGCCGUAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 19141 0.87 0.368195
Target:  5'- gGCCGAGAGAauAUCGGg--AAACGGACCg -3'
miRNA:   3'- -UGGCUUUCU--UAGCCguaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 65154 0.77 0.818819
Target:  5'- cACCGAuaucuccuacacuauAGGGAUCGGUu---ACGGACCu -3'
miRNA:   3'- -UGGCU---------------UUCUUAGCCGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 36632 0.77 0.824279
Target:  5'- aGCUGAAAaacugCGGCAUcAAGCGGGCCg -3'
miRNA:   3'- -UGGCUUUcuua-GCCGUA-UUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 93852 0.77 0.850473
Target:  5'- cACCGAuAG-AUCGacCGUGAACGGACCc -3'
miRNA:   3'- -UGGCUuUCuUAGCc-GUAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 14731 0.76 0.856303
Target:  5'- cACgGAAAGAcuggagacaugaugAUCGGCGUAuACGGuCCg -3'
miRNA:   3'- -UGgCUUUCU--------------UAGCCGUAUuUGCCuGG- -5'
3137 5' -47.2 NC_001493.1 + 130285 0.76 0.856303
Target:  5'- cACgGAAAGAcuggagacaugaugAUCGGCGUAuACGGuCCg -3'
miRNA:   3'- -UGgCUUUCU--------------UAGCCGUAUuUGCCuGG- -5'
3137 5' -47.2 NC_001493.1 + 44447 0.76 0.858768
Target:  5'- gACCgGGGAGaAAUUGGUcaGGACGGACCa -3'
miRNA:   3'- -UGG-CUUUC-UUAGCCGuaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 31943 0.75 0.903443
Target:  5'- aACCGAuccagGAGAGaCGGCAUGGGgGGGuCCa -3'
miRNA:   3'- -UGGCU-----UUCUUaGCCGUAUUUgCCU-GG- -5'
3137 5' -47.2 NC_001493.1 + 31701 0.75 0.909989
Target:  5'- cCCGAAuuuuGGAAUUGGUGUcuuGACGGAUCg -3'
miRNA:   3'- uGGCUU----UCUUAGCCGUAu--UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 112989 0.74 0.943618
Target:  5'- cGCCGGGAGGAUgGGCucggGGAaGGAUCa -3'
miRNA:   3'- -UGGCUUUCUUAgCCGua--UUUgCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 43456 0.73 0.952256
Target:  5'- uCCGggGGGucgaucugcgCGGCcgaucucGUAGACGGACCc -3'
miRNA:   3'- uGGCuuUCUua--------GCCG-------UAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 93827 0.73 0.952684
Target:  5'- nCCGggGGuaAAUCGGCG--GGCGcGACCu -3'
miRNA:   3'- uGGCuuUC--UUAGCCGUauUUGC-CUGG- -5'
3137 5' -47.2 NC_001493.1 + 7802 0.73 0.960715
Target:  5'- cACCGGGAGAcucgaucuUCGGgAUAAgcACGGACg -3'
miRNA:   3'- -UGGCUUUCUu-------AGCCgUAUU--UGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 123356 0.73 0.960715
Target:  5'- cACCGGGAGAcucgaucuUCGGgAUAAgcACGGACg -3'
miRNA:   3'- -UGGCUUUCUu-------AGCCgUAUU--UGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 57668 0.73 0.960715
Target:  5'- -aUGGAGGAGaugcUCGGCGaGGGCGGGCUg -3'
miRNA:   3'- ugGCUUUCUU----AGCCGUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 130462 0.73 0.964355
Target:  5'- cCCGGAGGGAgCGGUgcggguGCGGGCCc -3'
miRNA:   3'- uGGCUUUCUUaGCCGuauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 14908 0.73 0.964355
Target:  5'- cCCGGAGGGAgCGGUgcggguGCGGGCCc -3'
miRNA:   3'- uGGCUUUCUUaGCCGuauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 34434 0.72 0.967751
Target:  5'- cACCGAA-----CGGCAgcuGGCGGACCc -3'
miRNA:   3'- -UGGCUUucuuaGCCGUau-UUGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.