miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3137 5' -47.2 NC_001493.1 + 3230 0.66 0.999616
Target:  5'- cCCGAGguGGAGUCagaGGCGgacgaGGACCc -3'
miRNA:   3'- uGGCUU--UCUUAG---CCGUauuugCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 4070 0.71 0.984813
Target:  5'- cCCGAAAGAGUagcucgucgauaGGCgAUGccaccucaccccgGACGGACCg -3'
miRNA:   3'- uGGCUUUCUUAg-----------CCG-UAU-------------UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 4709 0.69 0.996584
Target:  5'- cCCGggGGcg-CGGCAgcGGCGGgggucACCg -3'
miRNA:   3'- uGGCuuUCuuaGCCGUauUUGCC-----UGG- -5'
3137 5' -47.2 NC_001493.1 + 5528 0.66 0.999697
Target:  5'- gGCgGGAGGAG-CGaGCc---GCGGACCg -3'
miRNA:   3'- -UGgCUUUCUUaGC-CGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 5772 0.68 0.998619
Target:  5'- cCCGAG---GUCGGCAUccAGCGGugUg -3'
miRNA:   3'- uGGCUUucuUAGCCGUAu-UUGCCugG- -5'
3137 5' -47.2 NC_001493.1 + 7509 0.67 0.999251
Target:  5'- cCCGGu-GGAUCGGgA-GGGCGGACUc -3'
miRNA:   3'- uGGCUuuCUUAGCCgUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 7700 0.66 0.999697
Target:  5'- cCCGAucgucGAGAcUCGGUgagGGAUGGACa -3'
miRNA:   3'- uGGCU-----UUCUuAGCCGua-UUUGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 7802 0.73 0.960715
Target:  5'- cACCGGGAGAcucgaucuUCGGgAUAAgcACGGACg -3'
miRNA:   3'- -UGGCUUUCUu-------AGCCgUAUU--UGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 8656 0.71 0.985369
Target:  5'- -aCGAGGGGugCGGaCAcGGACGGGCCa -3'
miRNA:   3'- ugGCUUUCUuaGCC-GUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 12163 0.68 0.998327
Target:  5'- gUCGAGGGAggCGGgaAUAGAUgguGGACCg -3'
miRNA:   3'- uGGCUUUCUuaGCCg-UAUUUG---CCUGG- -5'
3137 5' -47.2 NC_001493.1 + 13309 0.71 0.987113
Target:  5'- cCUGGGAGAcUCGGgGaacuGCGGGCCg -3'
miRNA:   3'- uGGCUUUCUuAGCCgUauu-UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 13730 0.66 0.999762
Target:  5'- cUCGGGAcGggUCGGUcu---CGGGCCu -3'
miRNA:   3'- uGGCUUU-CuuAGCCGuauuuGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 14535 0.68 0.998619
Target:  5'- uUCGAGcAGcgcCGGCGgacGACGGACCg -3'
miRNA:   3'- uGGCUU-UCuuaGCCGUau-UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 14731 0.76 0.856303
Target:  5'- cACgGAAAGAcuggagacaugaugAUCGGCGUAuACGGuCCg -3'
miRNA:   3'- -UGgCUUUCU--------------UAGCCGUAUuUGCCuGG- -5'
3137 5' -47.2 NC_001493.1 + 14908 0.73 0.964355
Target:  5'- cCCGGAGGGAgCGGUgcggguGCGGGCCc -3'
miRNA:   3'- uGGCUUUCUUaGCCGuauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 15295 1.14 0.009755
Target:  5'- aACCGAAAGAAUCGGCAUAAACGGACCg -3'
miRNA:   3'- -UGGCUUUCUUAGCCGUAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 16589 0.66 0.999616
Target:  5'- cCCGAGAGggUCgaacccuucgGGCGaacGGCGGuuuGCCa -3'
miRNA:   3'- uGGCUUUCuuAG----------CCGUau-UUGCC---UGG- -5'
3137 5' -47.2 NC_001493.1 + 19141 0.87 0.368195
Target:  5'- gGCCGAGAGAauAUCGGg--AAACGGACCg -3'
miRNA:   3'- -UGGCUUUCU--UAGCCguaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 22504 0.71 0.983452
Target:  5'- aACCGAguaucGAGuAUCGGU-UAAACGGcACCu -3'
miRNA:   3'- -UGGCU-----UUCuUAGCCGuAUUUGCC-UGG- -5'
3137 5' -47.2 NC_001493.1 + 22590 0.72 0.976554
Target:  5'- cAUgGAGAGggUCGaGCAcucaucacGCGGGCCg -3'
miRNA:   3'- -UGgCUUUCuuAGC-CGUauu-----UGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.