miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3137 5' -47.2 NC_001493.1 + 113256 0.68 0.997406
Target:  5'- cCCGAAAGAGaCGcGCGgucgcccagccACGGACCc -3'
miRNA:   3'- uGGCUUUCUUaGC-CGUauu--------UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 128863 0.71 0.987113
Target:  5'- cCUGGGAGAcUCGGgGaacuGCGGGCCg -3'
miRNA:   3'- uGGCUUUCUuAGCCgUauu-UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 106331 0.7 0.988541
Target:  5'- cACCGc-GGAGUCGGCGgccgccauggcgugcCGGGCCa -3'
miRNA:   3'- -UGGCuuUCUUAGCCGUauuu-----------GCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 67367 0.7 0.990116
Target:  5'- uCCGGucGAGUUGGuCAUGGaucgguucgucGCGGACUg -3'
miRNA:   3'- uGGCUuuCUUAGCC-GUAUU-----------UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 67712 0.7 0.991395
Target:  5'- aGCCGAuGGAuUCGGa--GGGgGGACCa -3'
miRNA:   3'- -UGGCUuUCUuAGCCguaUUUgCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 39477 0.7 0.993561
Target:  5'- gACUGAucGGGAUCGGCGUcAGCGucACCc -3'
miRNA:   3'- -UGGCUu-UCUUAGCCGUAuUUGCc-UGG- -5'
3137 5' -47.2 NC_001493.1 + 61940 0.69 0.995969
Target:  5'- uACCGAGAGGucgaaucCGGCGgauccCGGACUu -3'
miRNA:   3'- -UGGCUUUCUua-----GCCGUauuu-GCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 39990 0.69 0.995969
Target:  5'- uACUGugGGGggUGGUGUgGAGCGGACCc -3'
miRNA:   3'- -UGGCuuUCUuaGCCGUA-UUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 57371 0.69 0.997169
Target:  5'- gGCCGAAaauGGGAUCGuGCGguucacaccgucCGGGCCc -3'
miRNA:   3'- -UGGCUU---UCUUAGC-CGUauuu--------GCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 13309 0.71 0.987113
Target:  5'- cCUGGGAGAcUCGGgGaacuGCGGGCCg -3'
miRNA:   3'- uGGCUUUCUuAGCCgUauu-UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 124210 0.71 0.985369
Target:  5'- -aCGAGGGGugCGGaCAcGGACGGGCCa -3'
miRNA:   3'- ugGCUUUCUuaGCC-GUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 8656 0.71 0.985369
Target:  5'- -aCGAGGGGugCGGaCAcGGACGGGCCa -3'
miRNA:   3'- ugGCUUUCUuaGCC-GUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 130849 1.14 0.009755
Target:  5'- aACCGAAAGAAUCGGCAUAAACGGACCg -3'
miRNA:   3'- -UGGCUUUCUUAGCCGUAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 19141 0.87 0.368195
Target:  5'- gGCCGAGAGAauAUCGGg--AAACGGACCg -3'
miRNA:   3'- -UGGCUUUCU--UAGCCguaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 44447 0.76 0.858768
Target:  5'- gACCgGGGAGaAAUUGGUcaGGACGGACCa -3'
miRNA:   3'- -UGG-CUUUC-UUAGCCGuaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 31943 0.75 0.903443
Target:  5'- aACCGAuccagGAGAGaCGGCAUGGGgGGGuCCa -3'
miRNA:   3'- -UGGCU-----UUCUUaGCCGUAUUUgCCU-GG- -5'
3137 5' -47.2 NC_001493.1 + 43456 0.73 0.952256
Target:  5'- uCCGggGGGucgaucugcgCGGCcgaucucGUAGACGGACCc -3'
miRNA:   3'- uGGCuuUCUua--------GCCG-------UAUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 14908 0.73 0.964355
Target:  5'- cCCGGAGGGAgCGGUgcggguGCGGGCCc -3'
miRNA:   3'- uGGCUUUCUUaGCCGuauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 130462 0.73 0.964355
Target:  5'- cCCGGAGGGAgCGGUgcggguGCGGGCCc -3'
miRNA:   3'- uGGCUUUCUUaGCCGuauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 22504 0.71 0.983452
Target:  5'- aACCGAguaucGAGuAUCGGU-UAAACGGcACCu -3'
miRNA:   3'- -UGGCU-----UUCuUAGCCGuAUUUGCC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.