miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 112071 0.68 0.970563
Target:  5'- gUGGAGCuauuCGAAACCCcucGCGcGCG-GCACu -3'
miRNA:   3'- -ACUUCG----GCUUUGGG---UGUuUGCuCGUG- -5'
31389 3' -50.5 NC_006623.1 + 113099 0.67 0.980972
Target:  5'- uUGGAGUCGGGgauGCUCGCAGuauacGCGcGGCACc -3'
miRNA:   3'- -ACUUCGGCUU---UGGGUGUU-----UGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 114787 0.67 0.980972
Target:  5'- gGAAGCgGAAGugccuCCCACAAuaucAGCACa -3'
miRNA:   3'- aCUUCGgCUUU-----GGGUGUUugc-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 116860 0.68 0.976182
Target:  5'- aUGAuuCCGc-GCCCGgcAGCGAGCACg -3'
miRNA:   3'- -ACUucGGCuuUGGGUguUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 116875 0.66 0.994208
Target:  5'- cGAGGCgacuccauagCGAAGCCgCGCAGuACGgcauGGCGCg -3'
miRNA:   3'- aCUUCG----------GCUUUGG-GUGUU-UGC----UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 117289 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 119843 0.66 0.989786
Target:  5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3'
miRNA:   3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 120543 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 120739 0.66 0.993284
Target:  5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3'
miRNA:   3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 121700 0.72 0.852004
Target:  5'- -aAGGCCGAGGCCUc--GACGAGCAg -3'
miRNA:   3'- acUUCGGCUUUGGGuguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 123700 0.68 0.975921
Target:  5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3'
miRNA:   3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 126665 0.7 0.92817
Target:  5'- cGAGGCgGAAAUCUAUugGAGCGuuuAGCGCg -3'
miRNA:   3'- aCUUCGgCUUUGGGUG--UUUGC---UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 129261 0.71 0.897309
Target:  5'- aGGAGCagGAAAacgCCACGGACGAGCu- -3'
miRNA:   3'- aCUUCGg-CUUUg--GGUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 129304 0.67 0.983078
Target:  5'- gGAAugcGCCGG--UCCGCuGGACGAGUACg -3'
miRNA:   3'- aCUU---CGGCUuuGGGUG-UUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 130890 0.74 0.778755
Target:  5'- cGggGauuucuaCCGAGACCC-CGAGCGcGGCACa -3'
miRNA:   3'- aCuuC-------GGCUUUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131152 0.68 0.978676
Target:  5'- cGAGGCaccuGCCCAgAcccCGAGCACg -3'
miRNA:   3'- aCUUCGgcuuUGGGUgUuu-GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131563 0.7 0.933557
Target:  5'- -aGAGCCGGaaauuacucaGACCC-CGAGCGcGGCACc -3'
miRNA:   3'- acUUCGGCU----------UUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 133465 0.66 0.992245
Target:  5'- cGAAGacgaCGAAGuCCC-CGAGgacacCGAGCACg -3'
miRNA:   3'- aCUUCg---GCUUU-GGGuGUUU-----GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 134528 0.68 0.97348
Target:  5'- cGAA-CCGAcACCCGCAAACGAa--- -3'
miRNA:   3'- aCUUcGGCUuUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 134787 0.66 0.991082
Target:  5'- cGAGGCCGAucguugcGCUCAC-GACG-GCAg -3'
miRNA:   3'- aCUUCGGCUu------UGGGUGuUUGCuCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.