Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31390 | 3' | -57.4 | NC_006623.1 | + | 138076 | 0.66 | 0.870571 |
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Target: 5'- cCCUCccggaAGACCUccccgaAGGuucccaaaacucgauCCGCGCGUUcgugGCCCa -3' miRNA: 3'- -GGAG-----UUUGGA------UCC---------------GGCGCGCAG----CGGG- -5' |
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| 31390 | 3' | -57.4 | NC_006623.1 | + | 7946 | 0.66 | 0.881851 |
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Target: 5'- aCCUCGcuCacgcAGGCCG-GuCGUCGCCg -3' miRNA: 3'- -GGAGUuuGga--UCCGGCgC-GCAGCGGg -5' |
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| 31390 | 3' | -57.4 | NC_006623.1 | + | 124149 | 0.66 | 0.882538 |
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Target: 5'- gCC-CAGGCCacuauuccggcagcGGCCGCcgacgcggcgaGCGUCGCCg -3' miRNA: 3'- -GGaGUUUGGau------------CCGGCG-----------CGCAGCGGg -5' |
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| 31390 | 3' | -57.4 | NC_006623.1 | + | 115678 | 0.66 | 0.888625 |
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Target: 5'- uCCgcagaGGGCCgcgUAGGCguaCGCGCGuucuaaaaauUCGCCCg -3' miRNA: 3'- -GGag---UUUGG---AUCCG---GCGCGC----------AGCGGG- -5' |
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| 31390 | 3' | -57.4 | NC_006623.1 | + | 134300 | 0.66 | 0.888625 |
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Target: 5'- aCUCuauuCCaAGGCUuCGUGUCGCaCCu -3' miRNA: 3'- gGAGuuu-GGaUCCGGcGCGCAGCG-GG- -5' |
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| 31390 | 3' | -57.4 | NC_006623.1 | + | 145934 | 0.66 | 0.888625 |
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Target: 5'- uCCgcagaGGGCCgcgUAGGCguaCGCGCGuucuaaaaauUCGCCCg -3' miRNA: 3'- -GGag---UUUGG---AUCCG---GCGCGC----------AGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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