Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31630 | 5' | -63.4 | NC_006879.1 | + | 8348 | 0.66 | 0.232874 |
Target: 5'- uGCUCCACUucuuccucgcggagGUCGCCGUGgCccgcucgcuccacggUGGCGGCc -3' miRNA: 3'- gCGGGGUGG--------------CGGCGGUAC-G---------------ACCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 5937 | 0.66 | 0.226348 |
Target: 5'- uGCCCgACgagCGCacCGCCGUGUuccccgagUGGCGGUg -3' miRNA: 3'- gCGGGgUG---GCG--GCGGUACG--------ACCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 19954 | 0.66 | 0.22055 |
Target: 5'- aGCCCacgaACCcugaGuuGUUAUGCUGGUauGGCa -3' miRNA: 3'- gCGGGg---UGG----CggCGGUACGACCG--UCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 11469 | 0.66 | 0.21488 |
Target: 5'- gGUCCaugGCCGCCGCCcagucaucGgaGGCGGUc -3' miRNA: 3'- gCGGGg--UGGCGGCGGua------CgaCCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 11201 | 0.66 | 0.21488 |
Target: 5'- uCGuCCCCGgCGcCCGCCAgcgcccucUGCaGGCuguGCa -3' miRNA: 3'- -GC-GGGGUgGC-GGCGGU--------ACGaCCGu--CG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 32747 | 0.66 | 0.209335 |
Target: 5'- aCGCagggACCGgCGUuacuuggagaCGUGCUGGCAGCg -3' miRNA: 3'- -GCGggg-UGGCgGCG----------GUACGACCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 11150 | 0.66 | 0.203913 |
Target: 5'- uCGCUCaGCUcCCGCCGgcgGCUGGC-GCu -3' miRNA: 3'- -GCGGGgUGGcGGCGGUa--CGACCGuCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 15031 | 0.66 | 0.203913 |
Target: 5'- cCGCCaaCGCCGCCGCCGggagGGCccGCc -3' miRNA: 3'- -GCGGg-GUGGCGGCGGUacgaCCGu-CG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 15769 | 0.66 | 0.203913 |
Target: 5'- -uCCCCucUUGCUGuCCGUGCUGGC-GCu -3' miRNA: 3'- gcGGGGu-GGCGGC-GGUACGACCGuCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 3431 | 0.66 | 0.203913 |
Target: 5'- aGUCCaaaAUCaGCCGCCAUGCcgcGaGCAGUa -3' miRNA: 3'- gCGGGg--UGG-CGGCGGUACGa--C-CGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 17181 | 0.66 | 0.203378 |
Target: 5'- cCGCCgCCACCGCCGCCccccacgcgcccgAccguucccccccUGCcGGCuccgucGGCg -3' miRNA: 3'- -GCGG-GGUGGCGGCGG-------------U------------ACGaCCG------UCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 15071 | 0.67 | 0.193436 |
Target: 5'- cCGCCaggCUGCUGCCGCCAUcGCUaGCauGGCc -3' miRNA: 3'- -GCGG---GGUGGCGGCGGUA-CGAcCG--UCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 17248 | 0.67 | 0.178604 |
Target: 5'- uGUCCgCAcCCGUCGCCGUGCcucUGcCAGCc -3' miRNA: 3'- gCGGG-GU-GGCGGCGGUACG---ACcGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 10293 | 0.67 | 0.173889 |
Target: 5'- cCGCCUCcgcucagguuuACUGCCGCCGcgGCggUGGUGGUg -3' miRNA: 3'- -GCGGGG-----------UGGCGGCGGUa-CG--ACCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 20842 | 0.67 | 0.173889 |
Target: 5'- uGCCUauuuUCGCCGCCA--CcGGCAGCg -3' miRNA: 3'- gCGGGgu--GGCGGCGGUacGaCCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 19308 | 0.67 | 0.173889 |
Target: 5'- gGCCuCCACCcugGaaGCCAUGCUGcGCAa- -3' miRNA: 3'- gCGG-GGUGG---CggCGGUACGAC-CGUcg -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 3346 | 0.67 | 0.173889 |
Target: 5'- cCGCUUCuGCUGCCGCUucuacUGCUcGCGGCa -3' miRNA: 3'- -GCGGGG-UGGCGGCGGu----ACGAcCGUCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 20277 | 0.68 | 0.164791 |
Target: 5'- gGCCUCGaugaCGCCGCgGUGC-GGCuGGUg -3' miRNA: 3'- gCGGGGUg---GCGGCGgUACGaCCG-UCG- -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 16173 | 0.68 | 0.160405 |
Target: 5'- uCGCCgCCGCCGCuccCGUCGUGCUcuGGCc-- -3' miRNA: 3'- -GCGG-GGUGGCG---GCGGUACGA--CCGucg -5' |
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31630 | 5' | -63.4 | NC_006879.1 | + | 15090 | 0.68 | 0.143894 |
Target: 5'- gGCCCUcCCGgCGgCGgcGUUGGCGGCa -3' miRNA: 3'- gCGGGGuGGCgGCgGUa-CGACCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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