Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31657 | 5' | -57.2 | NC_006883.1 | + | 27548 | 0.74 | 0.538387 |
Target: 5'- -aCCACcUGGACCuGGAGGACCa--- -3' miRNA: 3'- gaGGUGaACCUGGuCCUCCUGGacgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27526 | 0.7 | 0.761847 |
Target: 5'- uCUCCACcuguaGGACCugauGGAccuguaGGACCUGCu -3' miRNA: 3'- -GAGGUGaa---CCUGGu---CCU------CCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27485 | 0.71 | 0.705079 |
Target: 5'- -aCCugUaGGACCAGGAGcACCUuGCGg -3' miRNA: 3'- gaGGugAaCCUGGUCCUCcUGGA-CGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26803 | 0.75 | 0.500523 |
Target: 5'- -aCCAgUUGGACCuGGuGGACCaGCAg -3' miRNA: 3'- gaGGUgAACCUGGuCCuCCUGGaCGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26776 | 0.68 | 0.869357 |
Target: 5'- -aCCAgUUGGACCuGcAGGACCaguUGCAc -3' miRNA: 3'- gaGGUgAACCUGGuCcUCCUGG---ACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26724 | 0.77 | 0.387002 |
Target: 5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3' miRNA: 3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26677 | 0.74 | 0.538387 |
Target: 5'- -aCCACcUGGACCuGGAGGACCg--- -3' miRNA: 3'- gaGGUGaACCUGGuCCUCCUGGacgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26636 | 0.69 | 0.823074 |
Target: 5'- uUCCACcugugGGACCAGcAGGACCaguuggaccuguUGCAc -3' miRNA: 3'- gAGGUGaa---CCUGGUCcUCCUGG------------ACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 26571 | 0.77 | 0.387002 |
Target: 5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3' miRNA: 3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 25022 | 0.89 | 0.075605 |
Target: 5'- cCUCCugUUGGACCuGGAGGACCUGgAg -3' miRNA: 3'- -GAGGugAACCUGGuCCUCCUGGACgU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 24975 | 0.79 | 0.319 |
Target: 5'- -aCCACUUGGACCugauGGAccacuuGGACCUGUAg -3' miRNA: 3'- gaGGUGAACCUGGu---CCU------CCUGGACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23934 | 0.79 | 0.319 |
Target: 5'- -aCCAgUUGGACCAGuuGGACCUGUAg -3' miRNA: 3'- gaGGUgAACCUGGUCcuCCUGGACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23724 | 0.79 | 0.305162 |
Target: 5'- -cCUGC-UGGACCuGGAGGACCUGCu -3' miRNA: 3'- gaGGUGaACCUGGuCCUCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23698 | 0.78 | 0.333305 |
Target: 5'- -aCCAgaUGGACCuGGAGGACCaGCAg -3' miRNA: 3'- gaGGUgaACCUGGuCCUCCUGGaCGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23444 | 0.75 | 0.491238 |
Target: 5'- uUCCugUauuaccUGGACCuGGuGGACCUGUAg -3' miRNA: 3'- gAGGugA------ACCUGGuCCuCCUGGACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23402 | 0.76 | 0.454939 |
Target: 5'- gUCCAgUUGGACCuGuGGGACCUGUg -3' miRNA: 3'- gAGGUgAACCUGGuCcUCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23374 | 0.66 | 0.914295 |
Target: 5'- -aCCAgUUGGACCuGGAuuugaaGGACCUaCAg -3' miRNA: 3'- gaGGUgAACCUGGuCCU------CCUGGAcGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23341 | 0.69 | 0.788894 |
Target: 5'- -aCCAgUUGGACCuGGAGaACCaGCAg -3' miRNA: 3'- gaGGUgAACCUGGuCCUCcUGGaCGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23305 | 0.71 | 0.705079 |
Target: 5'- -aCCAgUUGGACCAccgauaccuGGAGGACCUugaggaccaggaGCAc -3' miRNA: 3'- gaGGUgAACCUGGU---------CCUCCUGGA------------CGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 23242 | 0.77 | 0.37109 |
Target: 5'- -aCCAgUUGGACCuGGAGGACCaccaGCAg -3' miRNA: 3'- gaGGUgAACCUGGuCCUCCUGGa---CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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