Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31662 | 5' | -55.3 | NC_006883.1 | + | 22219 | 0.67 | 0.930828 |
Target: 5'- uGGACCauCUGGACCUGgaGGaCCAGc -3' miRNA: 3'- uCCUGGacGACCUGGACaaCUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 22052 | 0.73 | 0.64866 |
Target: 5'- cAGGACCaGUUGGACCUGUaGGaCCGu -3' miRNA: 3'- -UCCUGGaCGACCUGGACAaCUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 25014 | 0.73 | 0.638522 |
Target: 5'- uGGACCUGgaGGACCUGgagGA-CCGc -3' miRNA: 3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 23911 | 1.05 | 0.007695 |
Target: 5'- uAGGACCUGCUGGACCUGUUGAUCCAAc -3' miRNA: 3'- -UCCUGGACGACCUGGACAACUAGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 28460 | 0.69 | 0.868326 |
Target: 5'- uAGGACCUGgaGGuCCUGgagGA-CCAc -3' miRNA: 3'- -UCCUGGACgaCCuGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 22099 | 0.69 | 0.860861 |
Target: 5'- cGGACCUGgaGGACCacUUGGaCCAGg -3' miRNA: 3'- uCCUGGACgaCCUGGacAACUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 26663 | 0.7 | 0.812042 |
Target: 5'- gAGGACC-GuCUGGACCaGUUGGaCCAGu -3' miRNA: 3'- -UCCUGGaC-GACCUGGaCAACUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 28169 | 0.66 | 0.960831 |
Target: 5'- cAGGACCaGUUGGACCaGU---UCCAc -3' miRNA: 3'- -UCCUGGaCGACCUGGaCAacuAGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 27551 | 0.67 | 0.945061 |
Target: 5'- uGGACCacCUGGACCUGgagGA-CCAu -3' miRNA: 3'- uCCUGGacGACCUGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 26780 | 0.72 | 0.708932 |
Target: 5'- cAGGACCaGUUGGACCUGcagGA-CCAGu -3' miRNA: 3'- -UCCUGGaCGACCUGGACaa-CUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 22154 | 0.71 | 0.776193 |
Target: 5'- uAGGACCUGgaGGACCaGgUGAaCCAc -3' miRNA: 3'- -UCCUGGACgaCCUGGaCaACUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 23144 | 0.71 | 0.776193 |
Target: 5'- cAGGACCaGUUGGACCUGgagcaccugGAUCgGGa -3' miRNA: 3'- -UCCUGGaCGACCUGGACaa-------CUAGgUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 21901 | 0.67 | 0.925616 |
Target: 5'- cGGACCuUGC-GGACCUGgagGA-CCAc -3' miRNA: 3'- uCCUGG-ACGaCCUGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 24951 | 0.71 | 0.775269 |
Target: 5'- uGGACCUGUaGGACCUGgaggagcaagagaUUGAauuaUCCAAg -3' miRNA: 3'- uCCUGGACGaCCUGGAC-------------AACU----AGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 21774 | 0.67 | 0.920168 |
Target: 5'- aAGGACCUGgaGGACCaGaagGA-CCAGu -3' miRNA: 3'- -UCCUGGACgaCCUGGaCaa-CUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 22016 | 0.71 | 0.794405 |
Target: 5'- uAGGACCaGCaGGACCaGUUGGaCCAGg -3' miRNA: 3'- -UCCUGGaCGaCCUGGaCAACUaGGUU- -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 28267 | 0.71 | 0.757475 |
Target: 5'- uGGACCaGUUGGACCUGgagGA-CCAu -3' miRNA: 3'- uCCUGGaCGACCUGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 23246 | 0.73 | 0.64866 |
Target: 5'- cAGGACCaGUUGGACCUGgagGA-CCAc -3' miRNA: 3'- -UCCUGGaCGACCUGGACaa-CUaGGUu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 23937 | 0.69 | 0.868326 |
Target: 5'- cGGACCaGUUGGACCaGUUGGaCCu- -3' miRNA: 3'- uCCUGGaCGACCUGGaCAACUaGGuu -5' |
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31662 | 5' | -55.3 | NC_006883.1 | + | 223074 | 0.7 | 0.829037 |
Target: 5'- cAGGACCaGgaGGACCUGgagGA-CCAAc -3' miRNA: 3'- -UCCUGGaCgaCCUGGACaa-CUaGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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