miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 25020 0.71 0.795287
Target:  5'- uCCuGUuGGACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGuCCUGGuCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28534 0.66 0.962059
Target:  5'- aCCuGaAGGACCuGUUGGACCaGUuGGn -3'
miRNA:   3'- -GGuCgUCCUGGuCAACCUGGaCGuCC- -5'
31663 3' -56 NC_006883.1 + 21851 0.66 0.961389
Target:  5'- uCCAGUAGGACCAGgaccaccacucGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 28297 0.67 0.951142
Target:  5'- aCCAGUAGGACCAGUUGGn-------- -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCuggacgucc -5'
31663 3' -56 NC_006883.1 + 210943 0.67 0.94624
Target:  5'- aCCAGaaucuacaaguGGACCAGUUGGccaACCaaaUGCAGc -3'
miRNA:   3'- -GGUCgu---------CCUGGUCAACC---UGG---ACGUCc -5'
31663 3' -56 NC_006883.1 + 26686 0.67 0.938301
Target:  5'- aCCAGUuccACCAccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGuccUGGUcaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23343 0.67 0.933582
Target:  5'- ------nGACCAGUUGGACCUGgAGa -3'
miRNA:   3'- ggucgucCUGGUCAACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 23680 0.69 0.867223
Target:  5'- aCCAGCAGGACCAGguccaccACCaGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaacc---UGGaCGUcc -5'
31663 3' -56 NC_006883.1 + 27485 0.69 0.894357
Target:  5'- aCCuGUAGGACCAGgaGcACCUuGCGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCaaCcUGGA-CGUCc -5'
31663 3' -56 NC_006883.1 + 28420 0.66 0.968317
Target:  5'- aCCAuCAGaACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcGUCcUGGuCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 22087 0.76 0.53651
Target:  5'- aCCAcuuGGACCAGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcguCCUGGUCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 26713 0.76 0.546096
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGu -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 23176 0.72 0.721936
Target:  5'- aCCAGCAGGuCCAGUUaaACCUGgAGc -3'
miRNA:   3'- -GGUCGUCCuGGUCAAccUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 26650 0.76 0.53651
Target:  5'- aCCAGUuGGACCAGUUccACCUGUGGGn -3'
miRNA:   3'- -GGUCGuCCUGGUCAAccUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 223031 0.72 0.720026
Target:  5'- aCCAGUAGGACCAGgauuuccaacaGGACCaguUGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGG---ACGUcc -5'
31663 3' -56 NC_006883.1 + 27728 0.73 0.66368
Target:  5'- uCCuGUGGGACCuGUcGGACCaGUAGGa -3'
miRNA:   3'- -GGuCGUCCUGGuCAaCCUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 24966 0.76 0.517521
Target:  5'- aCCugauGGACCAcUUGGACCUGUAGGa -3'
miRNA:   3'- -GGucguCCUGGUcAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26785 1.13 0.002827
Target:  5'- aCCAGCAGGACCAGUUGGACCUGCAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 27557 0.73 0.712358
Target:  5'- aCCAcCuGGACCAccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUcGuCCUGGUcaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21916 0.73 0.683277
Target:  5'- aCCAGCAucaccuugcGGACCuugcGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGU---------CCUGGucaaCCUGGACgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.