miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 5' -50.9 NC_006883.1 + 41670 0.66 0.998844
Target:  5'- aCACCAGCAGGGuu-UUcCUUCCAg-- -3'
miRNA:   3'- -GUGGUCGUCCUgguAAuGAAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 23253 0.66 0.997999
Target:  5'- uCACCAGCAGGACCAg----------- -3'
miRNA:   3'- -GUGGUCGUCCUGGUaaugaagguaga -5'
31663 5' -50.9 NC_006883.1 + 26971 0.66 0.997999
Target:  5'- aACCAGCAGGACCuugugaaACUgauacCCA-CUg -3'
miRNA:   3'- gUGGUCGUCCUGGuaa----UGAa----GGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 232559 0.66 0.997999
Target:  5'- gCACCAGUAGuaGACCAcugUGCU-CUGUCa -3'
miRNA:   3'- -GUGGUCGUC--CUGGUa--AUGAaGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 103363 0.66 0.997622
Target:  5'- aCACCAGCAauGGAUCcugGUUGaugaUCCAUCa -3'
miRNA:   3'- -GUGGUCGU--CCUGG---UAAUga--AGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 23324 0.66 0.997187
Target:  5'- aACCAGCAGGACC-UUGaggaCCAg-- -3'
miRNA:   3'- gUGGUCGUCCUGGuAAUgaa-GGUaga -5'
31663 5' -50.9 NC_006883.1 + 222987 0.67 0.996118
Target:  5'- aACCAGCAGGACCAggugaaccUugUggaCCAg-- -3'
miRNA:   3'- gUGGUCGUCCUGGUa-------AugAa--GGUaga -5'
31663 5' -50.9 NC_006883.1 + 104241 0.67 0.993911
Target:  5'- gAUCuuGCAGGAgCAUUACUUCCu--- -3'
miRNA:   3'- gUGGu-CGUCCUgGUAAUGAAGGuaga -5'
31663 5' -50.9 NC_006883.1 + 38302 0.68 0.992983
Target:  5'- aACCaaGGCAGGACCAU-AUUUCgGUUc -3'
miRNA:   3'- gUGG--UCGUCCUGGUAaUGAAGgUAGa -5'
31663 5' -50.9 NC_006883.1 + 26786 0.68 0.992983
Target:  5'- gACCAGCAGGACCAguuggACcUgCAg-- -3'
miRNA:   3'- gUGGUCGUCCUGGUaa---UGaAgGUaga -5'
31663 5' -50.9 NC_006883.1 + 31855 0.68 0.992983
Target:  5'- cCACCAGCAGGACa---GCUUUUAg-- -3'
miRNA:   3'- -GUGGUCGUCCUGguaaUGAAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 27233 0.68 0.992983
Target:  5'- -uCCAGCAGGuCC--UACaggUCCAUCa -3'
miRNA:   3'- guGGUCGUCCuGGuaAUGa--AGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 194376 0.68 0.990791
Target:  5'- cCACCAGCAGcaccaccaACCAUUGCUccaCCAUUc -3'
miRNA:   3'- -GUGGUCGUCc-------UGGUAAUGAa--GGUAGa -5'
31663 5' -50.9 NC_006883.1 + 23151 0.68 0.988093
Target:  5'- gCACCAGCAGGACCAguuggaCCu--- -3'
miRNA:   3'- -GUGGUCGUCCUGGUaaugaaGGuaga -5'
31663 5' -50.9 NC_006883.1 + 223081 0.69 0.986533
Target:  5'- cCACCAGCAGGACCAggaggaCCu--- -3'
miRNA:   3'- -GUGGUCGUCCUGGUaaugaaGGuaga -5'
31663 5' -50.9 NC_006883.1 + 86791 0.69 0.98482
Target:  5'- aCAUCAGCAGaAUCAUUGauagUUCCAUCa -3'
miRNA:   3'- -GUGGUCGUCcUGGUAAUg---AAGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 28467 0.7 0.973675
Target:  5'- cCACCAGUAGGACCuggaggUccuggaggaccACUuccUCCAUCa -3'
miRNA:   3'- -GUGGUCGUCCUGGua----A-----------UGA---AGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 21968 0.7 0.970875
Target:  5'- gACCuGCAGGACCAggAgaUCCAg-- -3'
miRNA:   3'- gUGGuCGUCCUGGUaaUgaAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 117560 0.72 0.940527
Target:  5'- cCACCAGCAuuuGGACCAgaaccuuuaaUUGCUUCCc--- -3'
miRNA:   3'- -GUGGUCGU---CCUGGU----------AAUGAAGGuaga -5'
31663 5' -50.9 NC_006883.1 + 21726 0.72 0.940527
Target:  5'- gACCAGCAGGACCAguaggACcaccaccguUUCCA-CUa -3'
miRNA:   3'- gUGGUCGUCCUGGUaa---UG---------AAGGUaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.