Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 27671 | 1.13 | 0.004739 |
Target: 5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3' miRNA: 3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 27599 | 1.13 | 0.004739 |
Target: 5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3' miRNA: 3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 22078 | 0.98 | 0.040988 |
Target: 5'- -----aCCAGGAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 223075 | 0.98 | 0.038861 |
Target: 5'- gCAggaCCAGGAGGACCUGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 26719 | 0.96 | 0.052056 |
Target: 5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3' miRNA: 3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 26566 | 0.96 | 0.052056 |
Target: 5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3' miRNA: 3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28417 | 0.94 | 0.075254 |
Target: 5'- aUCAgaaCCuGGAGGACCUGGAGGACCa -3' miRNA: 3'- -AGUaaaGGuCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28372 | 0.93 | 0.085733 |
Target: 5'- gUCAgcaCCAGGAGGuCCUGGAGGACCa -3' miRNA: 3'- -AGUaaaGGUCCUCCuGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28324 | 0.91 | 0.113872 |
Target: 5'- -----aCCuGGAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 25011 | 0.91 | 0.113872 |
Target: 5'- -----aCCuGGAGGACCUGGAGGACCg -3' miRNA: 3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 23217 | 0.9 | 0.129342 |
Target: 5'- gCAggaCCAGGAGGACCaGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCCUCCUGGaCCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 23739 | 0.89 | 0.136057 |
Target: 5'- cCAgaUCCAGGAggaccugcuGGACCUGGAGGACCu -3' miRNA: 3'- aGUaaAGGUCCU---------CCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28563 | 0.89 | 0.150458 |
Target: 5'- ---gUUCCuGGuGGACCUGGAGGACCa -3' miRNA: 3'- aguaAAGGuCCuCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 21745 | 0.88 | 0.162154 |
Target: 5'- ---aUUCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaAAGGUCcuCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 26993 | 0.86 | 0.217456 |
Target: 5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3' miRNA: 3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 21779 | 0.85 | 0.233601 |
Target: 5'- -----aCCAGaAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcUCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 22194 | 0.85 | 0.22811 |
Target: 5'- gCAggaCCAGGAccaccacuaGGACCUGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCCU---------CCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 21976 | 0.85 | 0.233601 |
Target: 5'- -----aCCAGGAGGACCUGcAGGACCa -3' miRNA: 3'- aguaaaGGUCCUCCUGGACcUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 23247 | 0.83 | 0.301516 |
Target: 5'- gCAggaCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACCUCCUGG- -5' |
|||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28264 | 0.83 | 0.315389 |
Target: 5'- -----aCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home