miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 21745 0.88 0.162154
Target:  5'- ---aUUCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21779 0.85 0.233601
Target:  5'- -----aCCAGaAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21856 0.71 0.891386
Target:  5'- gCAggUCCAGuAGGACCaGGAccaccacucGGACCa -3'
miRNA:   3'- aGUaaAGGUCcUCCUGGaCCU---------CCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21877 0.67 0.975815
Target:  5'- -----aCCAGcAGGACCa-GAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGacCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21912 0.77 0.605328
Target:  5'- gCAUcaCCuugcGGAccuugcGGACCUGGAGGACCa -3'
miRNA:   3'- aGUAaaGGu---CCU------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21948 0.76 0.615317
Target:  5'- cCAguaCCAGGAGGACCaguUGGAccuguuGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGG---ACCU------CCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21976 0.85 0.233601
Target:  5'- -----aCCAGGAGGACCUGcAGGACCa -3'
miRNA:   3'- aguaaaGGUCCUCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22053 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGuAGGACCg -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22078 0.98 0.040988
Target:  5'- -----aCCAGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22113 0.79 0.4887
Target:  5'- cCAUcUCCAccacucGGACCUGGAGGACCa -3'
miRNA:   3'- aGUAaAGGUccu---CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22159 0.79 0.470215
Target:  5'- -----aCCAcuAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUccUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22194 0.85 0.22811
Target:  5'- gCAggaCCAGGAccaccacuaGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCU---------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22216 0.76 0.655319
Target:  5'- -----aCCAucuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUccuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22248 0.82 0.359862
Target:  5'- gCAgaUCCAGcAGGACCaGGAGGACCa -3'
miRNA:   3'- aGUaaAGGUCcUCCUGGaCCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23145 0.7 0.926721
Target:  5'- gCAggaCCAGuuGGACCUGGAGcACCu -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCUCcUGG- -5'
31665 3' -53.9 NC_006883.1 + 23217 0.9 0.129342
Target:  5'- gCAggaCCAGGAGGACCaGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGaCCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23247 0.83 0.301516
Target:  5'- gCAggaCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23287 0.79 0.50752
Target:  5'- -----aCCuGGAGGACCUuGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCUCCUGGAcCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23323 0.73 0.789604
Target:  5'- -----aCCAGcAGGACCUuGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGAcCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23374 0.7 0.921397
Target:  5'- -----aCCAGuuGGACCUGGAuuugaaGGACCu -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCU------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.