miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 243010 0.66 0.991386
Target:  5'- aUCAUUggCCAGGAGG-UCUGucAGGugUa -3'
miRNA:   3'- -AGUAAa-GGUCCUCCuGGACc-UCCugG- -5'
31665 3' -53.9 NC_006883.1 + 223075 0.98 0.038861
Target:  5'- gCAggaCCAGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 211186 0.74 0.733946
Target:  5'- gUAUgcaCAGGAuGGAgcuuauCCUGGAGGACCa -3'
miRNA:   3'- aGUAaagGUCCU-CCU------GGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28563 0.89 0.150458
Target:  5'- ---gUUCCuGGuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGuCCuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28542 0.66 0.985938
Target:  5'- nCAcUUCCAccuGaAGGACCUGuuGGACCa -3'
miRNA:   3'- aGUaAAGGU---CcUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28473 0.83 0.294758
Target:  5'- cCAUcUCCAccaguaggaccuGGAGGuCCUGGAGGACCa -3'
miRNA:   3'- aGUAaAGGU------------CCUCCuGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28417 0.94 0.075254
Target:  5'- aUCAgaaCCuGGAGGACCUGGAGGACCa -3'
miRNA:   3'- -AGUaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28372 0.93 0.085733
Target:  5'- gUCAgcaCCAGGAGGuCCUGGAGGACCa -3'
miRNA:   3'- -AGUaaaGGUCCUCCuGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28324 0.91 0.113872
Target:  5'- -----aCCuGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28303 0.67 0.982376
Target:  5'- aUCAUcaCCAGuAGGACCaGuuGGACCa -3'
miRNA:   3'- -AGUAaaGGUCcUCCUGGaCcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28264 0.83 0.315389
Target:  5'- -----aCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28102 0.83 0.315389
Target:  5'- -----aCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28067 0.68 0.959082
Target:  5'- cCAggUCCAGGcGGAaCUGGuccugcugguccuccAGGACCu -3'
miRNA:   3'- aGUaaAGGUCCuCCUgGACC---------------UCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27760 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGuGGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27729 0.66 0.984233
Target:  5'- ----gUCCuGuGGGACCUGucGGACCa -3'
miRNA:   3'- aguaaAGGuCcUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27671 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27599 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27554 0.79 0.50752
Target:  5'- -----aCCuGGAccaccuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCU------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27529 0.66 0.984233
Target:  5'- nCAUcUCCaccuguAGGAccugauGGACCUGuAGGACCu -3'
miRNA:   3'- aGUAaAGG------UCCU------CCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26993 0.86 0.217456
Target:  5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.