miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 27671 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27599 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 223075 0.98 0.038861
Target:  5'- gCAggaCCAGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22078 0.98 0.040988
Target:  5'- -----aCCAGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26566 0.96 0.052056
Target:  5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26719 0.96 0.052056
Target:  5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28417 0.94 0.075254
Target:  5'- aUCAgaaCCuGGAGGACCUGGAGGACCa -3'
miRNA:   3'- -AGUaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28372 0.93 0.085733
Target:  5'- gUCAgcaCCAGGAGGuCCUGGAGGACCa -3'
miRNA:   3'- -AGUaaaGGUCCUCCuGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 25011 0.91 0.113872
Target:  5'- -----aCCuGGAGGACCUGGAGGACCg -3'
miRNA:   3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28324 0.91 0.113872
Target:  5'- -----aCCuGGAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23217 0.9 0.129342
Target:  5'- gCAggaCCAGGAGGACCaGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGaCCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23739 0.89 0.136057
Target:  5'- cCAgaUCCAGGAggaccugcuGGACCUGGAGGACCu -3'
miRNA:   3'- aGUaaAGGUCCU---------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28563 0.89 0.150458
Target:  5'- ---gUUCCuGGuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGuCCuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21745 0.88 0.162154
Target:  5'- ---aUUCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26993 0.86 0.217456
Target:  5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5'
31665 3' -53.9 NC_006883.1 + 22194 0.85 0.22811
Target:  5'- gCAggaCCAGGAccaccacuaGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCU---------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21779 0.85 0.233601
Target:  5'- -----aCCAGaAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21976 0.85 0.233601
Target:  5'- -----aCCAGGAGGACCUGcAGGACCa -3'
miRNA:   3'- aguaaaGGUCCUCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28473 0.83 0.294758
Target:  5'- cCAUcUCCAccaguaggaccuGGAGGuCCUGGAGGACCa -3'
miRNA:   3'- aGUAaAGGU------------CCUCCuGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23247 0.83 0.301516
Target:  5'- gCAggaCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.