Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 28102 | 0.83 | 0.315389 |
Target: 5'- -----aCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 28264 | 0.83 | 0.315389 |
Target: 5'- -----aCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22248 | 0.82 | 0.359862 |
Target: 5'- gCAgaUCCAGcAGGACCaGGAGGACCa -3' miRNA: 3'- aGUaaAGGUCcUCCUGGaCCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 26685 | 0.8 | 0.443175 |
Target: 5'- cCAgUUCCAccaccuGGACCUGGAGGACCg -3' miRNA: 3'- aGUaAAGGUccu---CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23698 | 0.8 | 0.452092 |
Target: 5'- -----aCCAGauGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22159 | 0.79 | 0.470215 |
Target: 5'- -----aCCAcuAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUccUCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22113 | 0.79 | 0.4887 |
Target: 5'- cCAUcUCCAccacucGGACCUGGAGGACCa -3' miRNA: 3'- aGUAaAGGUccu---CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23287 | 0.79 | 0.50752 |
Target: 5'- -----aCCuGGAGGACCUuGAGGACCa -3' miRNA: 3'- aguaaaGGuCCUCCUGGAcCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 27554 | 0.79 | 0.50752 |
Target: 5'- -----aCCuGGAccaccuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGuCCU------CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21912 | 0.77 | 0.605328 |
Target: 5'- gCAUcaCCuugcGGAccuugcGGACCUGGAGGACCa -3' miRNA: 3'- aGUAaaGGu---CCU------CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21948 | 0.76 | 0.615317 |
Target: 5'- cCAguaCCAGGAGGACCaguUGGAccuguuGGACCa -3' miRNA: 3'- aGUaaaGGUCCUCCUGG---ACCU------CCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 26808 | 0.76 | 0.635323 |
Target: 5'- gCAggaCCAGuuGGACCUGGuGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACCuCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22216 | 0.76 | 0.655319 |
Target: 5'- -----aCCAucuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUccuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 211186 | 0.74 | 0.733946 |
Target: 5'- gUAUgcaCAGGAuGGAgcuuauCCUGGAGGACCa -3' miRNA: 3'- aGUAaagGUCCU-CCU------GGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23407 | 0.74 | 0.743483 |
Target: 5'- aUCuggUCCAGuuGGACCUGuGGGACCu -3' miRNA: 3'- -AGuaaAGGUCcuCCUGGACcUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23323 | 0.73 | 0.789604 |
Target: 5'- -----aCCAGcAGGACCUuGAGGACCa -3' miRNA: 3'- aguaaaGGUCcUCCUGGAcCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21856 | 0.71 | 0.891386 |
Target: 5'- gCAggUCCAGuAGGACCaGGAccaccacucGGACCa -3' miRNA: 3'- aGUaaAGGUCcUCCUGGaCCU---------CCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 26781 | 0.71 | 0.897834 |
Target: 5'- gCAggaCCAGuuGGACCUGcAGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22053 | 0.71 | 0.897834 |
Target: 5'- gCAggaCCAGuuGGACCUGuAGGACCg -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 27760 | 0.71 | 0.897834 |
Target: 5'- gCAggaCCAGuuGGACCUGuGGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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